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rtomiyasu |
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/* |
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* The MIT License |
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Conograph (powder auto-indexing program) |
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Copyright (c) <2012> <Ryoko Oishi-Tomiyasu, KEK> |
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Permission is hereby granted, free of charge, to any person obtaining a copy |
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of this software and associated documentation files (the "Software"), to deal |
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in the Software without restriction, including without limitation the rights |
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell |
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copies of the Software, and to permit persons to whom the Software is |
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furnished to do so, subject to the following conditions: |
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The above copyright notice and this permission notice shall be included in |
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all copies or substantial portions of the Software. |
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR |
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, |
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE |
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER |
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, |
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN |
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THE SOFTWARE. |
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* |
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*/ |
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#ifdef _OPENMP |
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# include <omp.h> |
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#endif |
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#include <list> |
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#include "indexing_func_dim2.hh" |
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#include "utility_data_structure/VCData.hh" |
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#include "utility_data_structure/Bud.hh" |
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#include "utility_data_structure/TreeLattice.hh" |
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#include "utility_func/stopx.hh" |
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#include "zlog/zlog.hh" |
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#include "GenerateRelation.hh" |
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bool find_bud(const vector<Bud>::const_iterator it_begin, |
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const vector<Bud>::const_iterator it_end, const Double& cv2, |
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const Bud& budex) |
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{ |
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const Double Q1 = budex.Q1().Value(); |
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const Double Q1_var = cv2 * budex.Q1().Variance(); |
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const Double diff = sqrt(Q1_var); |
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const vector<QData>& qdata = VCData::putPeakQData(); |
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const Int4 ibegin = distance( qdata.begin(), lower_bound( qdata.begin(), qdata.end(), QData(Q1 - diff, 0.0) ) ); |
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const Int4 iend = distance( qdata.begin(), upper_bound( qdata.begin()+ibegin, qdata.end(), QData(Q1 + diff, 0.0) ) ); |
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vector<Bud>::const_iterator it_basket; |
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Bud budex2; |
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for(Int4 i=ibegin; i<iend; i++) |
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{ |
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budex2.setIndex( i, budex.iK2(), budex.iK3(), budex.iK4() ); |
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it_basket = lower_bound( it_begin, it_end, budex2 ); |
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if( it_basket < it_end && *it_basket == budex2 ) return true; |
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} |
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return false; |
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} |
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void findRelation(const Double& cv2, const Int4& max_peak_num, const Int4& max_itnum, |
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vector<Bud>& ans) |
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{ |
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GenerateRelation gen_rel(max_peak_num); |
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gen_rel.initialize_type2(); |
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gen_rel.putRelationCandidate_type2(cv2, ans); |
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sort( ans.begin(), ans.end() ); |
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ZLOG_INFO( "Number of (q1, q2, q3, q4) satisfying 2(q1 + q2) = q3 + q4 : " + num2str(ans.size()) + "\n" ); |
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const Int4 num_bud = ans.size(); |
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vector<Bud> bud_tray; |
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gen_rel.initialize_type3(); |
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gen_rel.putRelationCandidate_type3(cv2, bud_tray); |
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if( !bud_tray.empty() ) |
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{ |
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sort( bud_tray.begin(), bud_tray.end() ); |
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if( !find_bud(ans.begin(), ans.begin()+num_bud, cv2, bud_tray[0]) ) |
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{ |
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ans.push_back(bud_tray[0]); |
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} |
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const Int4 max_size = bud_tray.size(); |
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#ifdef _OPENMP |
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#pragma omp parallel for |
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#endif |
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for(Int4 i_=1; i_<max_size; i_++) |
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{ |
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const vector<Bud>::const_iterator it=bud_tray.begin()+i_; |
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if( *(it-1) == *it ) continue; |
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if( !find_bud(ans.begin(), ans.begin()+num_bud, cv2, *it) ) |
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{ |
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#ifdef _OPENMP |
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#pragma omp critical |
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#endif |
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{ |
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ans.push_back(*it); |
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} |
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} |
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} |
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} |
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ZLOG_INFO( "Number of (q?, q2, q3, q4) detected from the equation 3q2 + q4 = 3q3 + q5 : " + num2str( ans.size() - num_bud ) + "\n" ); |
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sort( ans.begin(), ans.end() ); |
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} |
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// In this function, budex.iK1() < 0 is assumed. |
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// On input and output, bud_basket is sorted. |
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static void find_new_root_unobs(const Double& cv2, const Bud budex, |
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const vector<Bud>& bud_basket, |
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set<Bud>& newly_added_peak) |
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{ |
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const VCData K4 = budex.Q1(); |
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const VCData K3 = ( budex.Q2() + budex.Q3() )* 2 - K4; |
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const Double Q3 = K3.Value(); |
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const Double Q3_diff = sqrt( cv2 * K3.Variance() ); |
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const vector<QData>& qdata = VCData::putPeakQData(); |
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const pair<vector<QData>::const_iterator, vector<QData>::const_iterator> |
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it_pair_dbl2 = closest_qdata(qdata.begin(), qdata.end(), Q3, Q3_diff); |
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if( it_pair_dbl2.first >= it_pair_dbl2.second ) return; |
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assert( qdata.begin() <= it_pair_dbl2.first ); |
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assert( it_pair_dbl2.second <= qdata.end() ); |
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const Int4 Q3_start = distance(qdata.begin(), it_pair_dbl2.first); |
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const Int4 Q3_end = distance(qdata.begin(), it_pair_dbl2.second); |
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Bud bud_tray = putBud124( budex.iK3(), budex.iK2(), -1 ); |
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pair<vector<Bud>::const_iterator, vector<Bud>::const_iterator> it_pair; |
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vector<Bud>::const_iterator it2; |
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Vec_BOOL found_flag(Q3_end-Q3_start, false); |
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if( K3.Value() <= K4.Value() ) |
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{ |
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it_pair = equal_range_bud124(bud_basket.begin(), bud_basket.end(), bud_tray.iK1(), bud_tray.iK2(), bud_tray.iK4()); |
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for(it2=it_pair.first; it2<it_pair.second; it2++) |
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{ |
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if( Q3_start <= it2->iK3() && it2->iK3() < Q3_end ) |
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{ |
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found_flag[it2->iK3() - Q3_start] = true; |
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} |
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} |
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for(Int4 k2=Q3_start, k=0; k2<Q3_end; k2++, k++) |
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{ |
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if( found_flag[k] ) continue; |
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bud_tray.setIndex( bud_tray.iK1(), bud_tray.iK2(), k2, -1 ); |
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// bud_basket.insert( upper_bound( bud_basket.begin(), bud_basket.end(), bud_tray ), bud_tray ); |
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newly_added_peak.insert( bud_tray ); |
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} |
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} |
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else |
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{ |
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it_pair = equal_range_bud12(bud_basket.begin(), bud_basket.end(), bud_tray.iK1(), bud_tray.iK2()); |
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vector<Bud>::const_iterator it, it2; |
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for(it2=it_pair.first; it2<it_pair.second; it2++) |
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{ |
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if( it2->iK3() == -1 && Q3_start <= it2->iK4() && it2->iK4() < Q3_end ) |
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{ |
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found_flag[it2->iK4() - Q3_start] = true; |
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} |
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} |
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for(Int4 k2=Q3_start, k=0; k2<Q3_end; k2++, k++) |
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{ |
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if( found_flag[k] ) continue; |
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bud_tray.setIndex( bud_tray.iK1(), bud_tray.iK2(), -1, k2 ); |
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// bud_basket.insert( upper_bound( bud_basket.begin(), bud_basket.end(), bud_tray ), bud_tray ); |
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newly_added_peak.insert( bud_tray ); |
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} |
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} |
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} |
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// In this function, K1, K2, K34 >= 0. |
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// On input and output, bud_basket is sorted. |
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static void find_new_root_obs(const Double& cv2, |
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const Int4& K1, const Int4& K2, const Int4& K34, |
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const vector<Bud>& bud_basket, |
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set<Bud>& newly_added_peak) |
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{ |
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const vector<QData>& qdata = VCData::putPeakQData(); |
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const Double Q3 = ( qdata[K1].q + qdata[K2].q ) * 2.0 - qdata[K34].q; |
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if( Q3 > qdata[K34].q ) return; |
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Bud bud_tray = putBud124( K1, K2, K34 ); |
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pair< vector<Bud>::const_iterator, vector<Bud>::const_iterator> it_pair = equal_range_bud124(bud_basket.begin(), bud_basket.end(), bud_tray.iK1(), bud_tray.iK2(), bud_tray.iK4()); |
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if( it_pair.first < it_pair.second ) return; |
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newly_added_peak.insert( bud_tray ); |
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} |
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// On input and output, bud_basket is sorted. |
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static void find_new_root(const Double& cv2, const Bud budex, |
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const vector<Bud>& bud_basket, |
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set<Bud>& newly_added_peak) |
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{ |
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if( budex.iK3() < 0 ) |
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{ |
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return; |
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} |
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if( budex.iK1() < 0 ) |
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{ |
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find_new_root_unobs(cv2, budex, bud_basket, newly_added_peak); |
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} |
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else // budex.iK3(), budex.iK1(), budex.iK2() >=0. |
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{ |
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find_new_root_obs(cv2, budex.iK3(), budex.iK1(), budex.iK2(), bud_basket, newly_added_peak); |
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find_new_root_obs(cv2, budex.iK3(), budex.iK2(), budex.iK1(), bud_basket, newly_added_peak); |
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} |
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} |
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// On input and output, bud_basket is sorted. |
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static void find_leftandright_branch(const Double& cv2, |
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const vector<Bud>& bud_basket, |
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Vec_BOOL& root_flag, |
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vector< vector<Int4> >& leftbr_tray, |
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vector< vector<Int4> >& rightbr_tray) |
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{ |
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root_flag.clear(); |
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leftbr_tray.clear(); |
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rightbr_tray.clear(); |
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const Int4 nsize = bud_basket.size(); |
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root_flag.resize(nsize, true); |
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leftbr_tray.resize(nsize); |
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rightbr_tray.resize(nsize); |
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const vector<QData>& qdata = VCData::putPeakQData(); |
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const Int4 bad_num = bud_basket.size(); |
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Int4 k2; |
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Double diff, Q3; |
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Bud budex; |
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pair<vector<Bud>::const_iterator, vector<Bud>::const_iterator> it_pair; |
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/* 2011.10.19 VIC Tamura */ |
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Int4 LOOP_COUNTER = 0; |
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#ifdef _OPENMP |
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#pragma omp parallel for private(k2, diff, it_pair, budex, Q3) |
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#endif |
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for(Int4 k=0; k<bad_num; k++) |
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{ |
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/* 2011.10.19 VIC Tamura */ |
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SET_PROGRESS(100*(LOOP_COUNTER++)/bad_num, 5, 1); // critical, but works |
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if(IS_CANSELED()) continue; |
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const vector<Bud>::const_iterator it=bud_basket.begin() + k; |
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if( it->iK3() == it->iK4() ) continue; |
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if( it->Q2() < it->Q1() ) |
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{ |
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budex = putBud124(it->iK3(), it->iK2(), it->iK1()); |
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Q3 = ( it->Q2().Value() + it->Q3().Value() )* 2.0 - it->Q1().Value(); |
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} |
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else |
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{ |
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budex = putBud124(it->iK3(), it->iK1(), it->iK2()); |
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Q3 = ( it->Q1().Value() + it->Q3().Value() )* 2.0 - it->Q2().Value(); |
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} |
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it_pair = equal_range_bud124(bud_basket.begin(), bud_basket.end(), budex.iK1(), budex.iK2(), budex.iK4()); |
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k2 = distance( bud_basket.begin(), it_pair.first ); |
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for(vector<Bud>::const_iterator it2=it_pair.first; it2<it_pair.second; it2++, k2++) |
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{ |
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if( budex.iK1() < 0 || budex.iK2() < 0 || budex.iK4() < 0 ) |
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{ |
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diff = qdata[it2->iK3()].q - Q3; |
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if( diff * diff > cv2 * qdata[it2->iK3()].q_var ) continue; |
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} |
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if( it->iK3() == budex.iK2() ) |
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{ |
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#ifdef _OPENMP |
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#pragma omp critical (lhs) |
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#endif |
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{ |
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leftbr_tray[k2].push_back(k); |
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} |
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} |
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if( it->iK3() == budex.iK1() ) |
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{ |
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#ifdef _OPENMP |
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#pragma omp critical (rhs) |
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#endif |
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{ |
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rightbr_tray[k2].push_back(k); |
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} |
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} |
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root_flag[k] = false; |
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} |
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} |
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/* 2011.10.19 VIC Tamura */ |
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CHECK_INTERRUPTION(); |
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} |
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// On input and output, bud_basket is sorted. |
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static void find_leftandright_root(const Double& cv2, |
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const Bud& budex, const vector<Bud>& bud_basket, |
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vector<Int4>& root_leftbr, |
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vector<Int4>& root_rightbr) |
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{ |
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root_leftbr.clear(); |
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root_rightbr.clear(); |
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const vector<QData>& qdata = VCData::putPeakQData(); |
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Int4 k2; |
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Double Q4, diff; |
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vector<Bud>::const_iterator it2; |
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|
|
pair<vector<Bud>::const_iterator, vector<Bud>::const_iterator> it2_pair; |
| 335 |
|
|
|
| 336 |
|
|
// Find a bud taking the root on the left branch. |
| 337 |
|
|
Bud bud_tray = putBud123( budex.iK2(), budex.iK3(), budex.iK1() ); |
| 338 |
|
|
|
| 339 |
|
|
Q4 = ( budex.Q2().Value() + budex.Q3().Value() )*2.0 - budex.Q1().Value(); |
| 340 |
|
|
if( Q4 > budex.Q1().Value() ) |
| 341 |
|
|
{ |
| 342 |
|
|
it2_pair = equal_range_bud12( bud_basket.begin(), bud_basket.end(), bud_tray.iK1(), bud_tray.iK2() ); |
| 343 |
|
|
k2 = distance( bud_basket.begin(), it2_pair.first ); |
| 344 |
|
|
for(it2=it2_pair.first; it2<it2_pair.second; it2++, k2++) |
| 345 |
|
|
{ |
| 346 |
|
|
if( it2->iK3() != bud_tray.iK3() ) continue; |
| 347 |
|
|
if( it2->iK3() == it2->iK4() ) continue; |
| 348 |
|
|
if( bud_tray.iK1() < 0 || bud_tray.iK2() < 0 || bud_tray.iK3() < 0 ) |
| 349 |
|
|
{ |
| 350 |
|
|
diff = qdata[it2->iK4()].q - Q4; |
| 351 |
|
|
if( diff * diff > cv2 * qdata[it2->iK4()].q_var ) continue; |
| 352 |
|
|
} |
| 353 |
|
|
root_leftbr.push_back(k2); |
| 354 |
|
|
} |
| 355 |
|
|
} |
| 356 |
|
|
|
| 357 |
|
|
|
| 358 |
|
|
|
| 359 |
|
|
// Find a bud taking the root on the right branch. |
| 360 |
|
|
if( budex.iK1() == budex.iK2() ) |
| 361 |
|
|
{ |
| 362 |
|
|
root_rightbr = root_leftbr; |
| 363 |
|
|
} |
| 364 |
|
|
else |
| 365 |
|
|
{ |
| 366 |
|
|
bud_tray = putBud123( budex.iK1(), budex.iK3(), budex.iK2() ); |
| 367 |
|
|
|
| 368 |
|
|
Q4 = ( budex.Q1().Value() + budex.Q3().Value() )*2.0 - budex.Q2().Value(); |
| 369 |
|
|
if( Q4 > budex.Q2().Value() ) |
| 370 |
|
|
{ |
| 371 |
|
|
it2_pair = equal_range_bud12( bud_basket.begin(), bud_basket.end(), bud_tray.iK1(), bud_tray.iK2() ); |
| 372 |
|
|
k2 = distance( bud_basket.begin(), it2_pair.first ); |
| 373 |
|
|
for(it2=it2_pair.first; it2<it2_pair.second; it2++, k2++) |
| 374 |
|
|
{ |
| 375 |
|
|
if( it2->iK3() != bud_tray.iK3() ) continue; |
| 376 |
|
|
if( it2->iK3() == it2->iK4() ) continue; |
| 377 |
|
|
if( bud_tray.iK1() < 0 || bud_tray.iK2() < 0 || bud_tray.iK3() < 0 ) |
| 378 |
|
|
{ |
| 379 |
|
|
// if( it2->iK3() < 0 ) continue; |
| 380 |
|
|
diff = qdata[it2->iK4()].q - Q4; |
| 381 |
|
|
if( diff * diff > cv2 * qdata[it2->iK4()].q_var ) continue; |
| 382 |
|
|
} |
| 383 |
|
|
root_rightbr.push_back(k2); |
| 384 |
|
|
} |
| 385 |
|
|
} |
| 386 |
|
|
} |
| 387 |
|
|
} |
| 388 |
|
|
|
| 389 |
|
|
|
| 390 |
|
|
// On input, bud_basket is sorted. |
| 391 |
|
|
void findNeighborRelation(const Double& cv2, |
| 392 |
|
|
vector<Bud>& bud_basket, |
| 393 |
|
|
Vec_BOOL& root_flag, |
| 394 |
|
|
vector< vector<Int4> >& leftbr_tray, |
| 395 |
|
|
vector< vector<Int4> >& rightbr_tray, |
| 396 |
|
|
vector< vector<Int4> >& root_leftbr, |
| 397 |
|
|
vector< vector<Int4> >& root_rightbr) |
| 398 |
|
|
{ |
| 399 |
|
|
vector<Bud> new_bud_tray = bud_basket; |
| 400 |
|
|
set<Bud> new_bud_tray_all; |
| 401 |
|
|
|
| 402 |
|
|
do |
| 403 |
|
|
{ |
| 404 |
|
|
/* 2011.10.19 VIC Tamura */ |
| 405 |
|
|
SET_PROGRESS(100*(bud_basket.size()-new_bud_tray.size())/bud_basket.size(), 4, 1); |
| 406 |
|
|
CHECK_INTERRUPTION(); |
| 407 |
|
|
|
| 408 |
|
|
const Int4 isize = new_bud_tray.size(); |
| 409 |
|
|
#ifdef _OPENMP |
| 410 |
|
|
#pragma omp parallel |
| 411 |
|
|
#endif |
| 412 |
|
|
{ |
| 413 |
|
|
set<Bud> new_bud; |
| 414 |
|
|
|
| 415 |
|
|
#ifdef _OPENMP |
| 416 |
|
|
#pragma omp for |
| 417 |
|
|
#endif |
| 418 |
|
|
for(Int4 i=0; i<isize; i++) |
| 419 |
|
|
{ |
| 420 |
|
|
find_new_root(cv2, new_bud_tray[i], bud_basket, new_bud); |
| 421 |
|
|
} |
| 422 |
|
|
|
| 423 |
|
|
#ifdef _OPENMP |
| 424 |
|
|
#pragma omp single |
| 425 |
|
|
#endif |
| 426 |
|
|
{ |
| 427 |
|
|
new_bud_tray.clear(); |
| 428 |
|
|
} |
| 429 |
|
|
|
| 430 |
|
|
#ifdef _OPENMP |
| 431 |
|
|
#pragma omp critical |
| 432 |
|
|
#endif |
| 433 |
|
|
{ |
| 434 |
|
|
for(set<Bud>::const_iterator it=new_bud.begin(); it!=new_bud.end(); it++) |
| 435 |
|
|
{ |
| 436 |
|
|
if( new_bud_tray_all.find(*it) != new_bud_tray_all.end() ) continue; |
| 437 |
|
|
new_bud_tray_all.insert(*it); |
| 438 |
|
|
new_bud_tray.push_back(*it); |
| 439 |
|
|
} |
| 440 |
|
|
} |
| 441 |
|
|
} |
| 442 |
|
|
} while( !new_bud_tray.empty() ); |
| 443 |
|
|
|
| 444 |
|
|
bud_basket.insert(bud_basket.end(), new_bud_tray_all.begin(), new_bud_tray_all.end()); |
| 445 |
|
|
sort( bud_basket.begin(), bud_basket.end() ); |
| 446 |
|
|
|
| 447 |
|
|
const Int4 nsize = bud_basket.size(); |
| 448 |
|
|
|
| 449 |
|
|
find_leftandright_branch(cv2, bud_basket, |
| 450 |
|
|
root_flag, leftbr_tray, rightbr_tray); |
| 451 |
|
|
|
| 452 |
|
|
root_leftbr.clear(); |
| 453 |
|
|
root_rightbr.clear(); |
| 454 |
|
|
|
| 455 |
|
|
root_leftbr.resize(nsize); |
| 456 |
|
|
root_rightbr.resize(nsize); |
| 457 |
|
|
|
| 458 |
|
|
/* 2011.10.19 VIC Tamura */ |
| 459 |
|
|
Int4 LOOP_COUNTER = 0; |
| 460 |
|
|
|
| 461 |
|
|
#ifdef _OPENMP |
| 462 |
|
|
#pragma omp parallel for |
| 463 |
|
|
#endif |
| 464 |
|
|
for(Int4 i=0; i<nsize; i++) |
| 465 |
|
|
{ |
| 466 |
|
|
/* 2011.10.19 VIC Tamura */ |
| 467 |
|
|
SET_PROGRESS(100*(LOOP_COUNTER++)/nsize, 6, 1); // critical, but works |
| 468 |
|
|
if(IS_CANSELED()) continue; |
| 469 |
|
|
|
| 470 |
|
|
if( !root_flag[i] ) continue; |
| 471 |
|
|
if( bud_basket[i].iK3() == bud_basket[i].iK4() ) continue; |
| 472 |
|
|
|
| 473 |
|
|
find_leftandright_root(cv2, bud_basket[i], bud_basket, root_leftbr[i], root_rightbr[i]); |
| 474 |
|
|
} |
| 475 |
|
|
|
| 476 |
|
|
/* 2011.10.19 VIC Tamura */ |
| 477 |
|
|
CHECK_INTERRUPTION(); |
| 478 |
|
|
} |
| 479 |
|
|
|
| 480 |
|
|
|
| 481 |
|
|
|
| 482 |
|
|
|
| 483 |
|
|
|
| 484 |
|
|
|
| 485 |
|
|
static void construct_tree(const Int4& k, |
| 486 |
|
|
const vector<Bud>::const_iterator& it_begin, |
| 487 |
|
|
const vector< vector<Int4> >& leftbr_tray, |
| 488 |
|
|
const vector< vector<Int4> >& rightbr_tray, |
| 489 |
|
|
TreeLattice& tree_tray) |
| 490 |
|
|
{ |
| 491 |
|
|
const vector<Bud>::const_iterator& it = it_begin + k; |
| 492 |
|
|
|
| 493 |
|
|
TreeLattice tree_left, tree_right; |
| 494 |
|
|
tree_left.setRoot(it->iK1(), it->iK4()); |
| 495 |
|
|
tree_right.setRoot(it->iK2(), it->iK4()); |
| 496 |
|
|
|
| 497 |
|
|
if( !leftbr_tray[k].empty() ) |
| 498 |
|
|
{ |
| 499 |
|
|
TreeLattice tree_left2; |
| 500 |
|
|
for(vector<Int4>::const_iterator it2=leftbr_tray[k].begin(); it2!=leftbr_tray[k].end(); it2++) |
| 501 |
|
|
{ |
| 502 |
|
|
if( *it2 != k ) |
| 503 |
|
|
{ |
| 504 |
|
|
construct_tree(*it2, it_begin, leftbr_tray, rightbr_tray, tree_left2); |
| 505 |
|
|
if( tree_left.Root().count_bud() < tree_left2.Root().count_bud() ) |
| 506 |
|
|
{ |
| 507 |
|
|
tree_left = tree_left2; |
| 508 |
|
|
} |
| 509 |
|
|
} |
| 510 |
|
|
} |
| 511 |
|
|
if( tree_left.Root().Right() != it->iK4() ) tree_left.swapBranch(); |
| 512 |
|
|
} |
| 513 |
|
|
|
| 514 |
|
|
if( !rightbr_tray[k].empty() ) |
| 515 |
|
|
{ |
| 516 |
|
|
TreeLattice tree_right2; |
| 517 |
|
|
for(vector<Int4>::const_iterator it2=rightbr_tray[k].begin(); it2!=rightbr_tray[k].end(); it2++) |
| 518 |
|
|
{ |
| 519 |
|
|
if( *it2 != k ) |
| 520 |
|
|
{ |
| 521 |
|
|
construct_tree(*it2, it_begin, leftbr_tray, rightbr_tray, tree_right2); |
| 522 |
|
|
if( tree_right.Root().count_bud() < tree_right2.Root().count_bud() ) |
| 523 |
|
|
{ |
| 524 |
|
|
tree_right = tree_right2; |
| 525 |
|
|
} |
| 526 |
|
|
} |
| 527 |
|
|
} |
| 528 |
|
|
if( tree_right.Root().Right() != it->iK4() ) tree_right.swapBranch(); |
| 529 |
|
|
} |
| 530 |
|
|
|
| 531 |
|
|
tree_tray.clear(); |
| 532 |
|
|
tree_tray.setRoot(tree_left.Root(), tree_right.Root()); |
| 533 |
|
|
} |
| 534 |
|
|
|
| 535 |
|
|
|
| 536 |
|
|
void constructTree(const vector<Bud>& bud_basket, |
| 537 |
|
|
const Vec_BOOL& root_flag, |
| 538 |
|
|
const vector< vector<Int4> >& leftbr_tray, |
| 539 |
|
|
const vector< vector<Int4> >& rightbr_tray, |
| 540 |
|
|
const vector< vector<Int4> >& root_leftbr_tray, |
| 541 |
|
|
const vector< vector<Int4> >& root_rightbr_tray, const Int4& MAX_TREE, |
| 542 |
|
|
vector<TreeLattice>& tree_tray) |
| 543 |
|
|
{ |
| 544 |
|
|
tree_tray.clear(); |
| 545 |
|
|
const Int4 nsize = bud_basket.size(); |
| 546 |
|
|
|
| 547 |
|
|
/* 2011.10.19 VIC Tamura */ |
| 548 |
|
|
Int4 LOOP_COUNTER = 0; |
| 549 |
|
|
|
| 550 |
|
|
#ifdef _OPENMP |
| 551 |
|
|
#pragma omp parallel |
| 552 |
|
|
#endif |
| 553 |
|
|
{ |
| 554 |
|
|
TreeLattice chibi_tree; |
| 555 |
|
|
TreeLattice tree_left, tree_left2, tree_right, tree_right2; |
| 556 |
|
|
Int4 index; |
| 557 |
|
|
multiset<TreeLattice> tree_tray2; |
| 558 |
|
|
|
| 559 |
|
|
#ifdef _OPENMP |
| 560 |
|
|
#pragma omp for |
| 561 |
|
|
#endif |
| 562 |
|
|
for(Int4 k=0; k<nsize; k++) |
| 563 |
|
|
{ |
| 564 |
|
|
/* 2011.10.19 VIC Tamura */ |
| 565 |
|
|
SET_PROGRESS(100*(LOOP_COUNTER++)/nsize, 7, 1); // critical, but works |
| 566 |
|
|
if(IS_CANSELED()) continue; |
| 567 |
|
|
|
| 568 |
|
|
if( !root_flag[k] ) continue; |
| 569 |
|
|
const vector<Bud>::const_iterator it = bud_basket.begin() + k; |
| 570 |
|
|
|
| 571 |
|
|
const Int4 lsize = root_leftbr_tray[k].size(); |
| 572 |
|
|
const Int4 rsize = root_rightbr_tray[k].size(); |
| 573 |
|
|
|
| 574 |
|
|
// In the case of super-basis, avoid duplication of trees. |
| 575 |
|
|
for(index=0; index<lsize; index++) |
| 576 |
|
|
{ |
| 577 |
|
|
if( k > root_leftbr_tray[k][index] ) break; |
| 578 |
|
|
} |
| 579 |
|
|
if( index<lsize ) continue; |
| 580 |
|
|
for(index=0; index<rsize; index++) |
| 581 |
|
|
{ |
| 582 |
|
|
if( k > root_rightbr_tray[k][index] ) break; |
| 583 |
|
|
} |
| 584 |
|
|
if( index<rsize ) continue; |
| 585 |
|
|
construct_tree(k, bud_basket.begin(), leftbr_tray, rightbr_tray, chibi_tree); |
| 586 |
|
|
|
| 587 |
|
|
if( bud_basket[k].iK3() == bud_basket[k].iK4() ) |
| 588 |
|
|
{ |
| 589 |
|
|
chibi_tree.setRootEqualUpper(); |
| 590 |
|
|
continue; |
| 591 |
|
|
} |
| 592 |
|
|
|
| 593 |
|
|
if( it->IsSuperBasisObtuse() ) |
| 594 |
|
|
{ |
| 595 |
|
|
tree_left.setRoot( it->iK2(), it->iK3() ); |
| 596 |
|
|
for(vector<Int4>::const_iterator it2=root_leftbr_tray[k].begin(); it2<root_leftbr_tray[k].end(); it2++) |
| 597 |
|
|
{ |
| 598 |
|
|
construct_tree(*it2, bud_basket.begin(), leftbr_tray, rightbr_tray, tree_left2); |
| 599 |
|
|
if( tree_left.Root().count_bud() < tree_left2.Root().count_bud() ) |
| 600 |
|
|
{ |
| 601 |
|
|
tree_left = tree_left2; |
| 602 |
|
|
} |
| 603 |
|
|
} |
| 604 |
|
|
chibi_tree.setRootOnLeftBranch(tree_left.Root()); |
| 605 |
|
|
|
| 606 |
|
|
tree_right.setRoot( it->iK3(), it->iK1() ); |
| 607 |
|
|
for(vector<Int4>::const_iterator it2=root_rightbr_tray[k].begin(); it2<root_rightbr_tray[k].end(); it2++) |
| 608 |
|
|
{ |
| 609 |
|
|
construct_tree(*it2, bud_basket.begin(), leftbr_tray, rightbr_tray, tree_right2); |
| 610 |
|
|
if( tree_right.Root().count_bud() < tree_right2.Root().count_bud() ) |
| 611 |
|
|
{ |
| 612 |
|
|
tree_right = tree_right2; |
| 613 |
|
|
} |
| 614 |
|
|
} |
| 615 |
|
|
chibi_tree.setRootOnRightBranch(tree_right.Root()); |
| 616 |
|
|
} |
| 617 |
|
|
else if( it->Q1() < it->Q2() ) |
| 618 |
|
|
{ |
| 619 |
|
|
NodeB node = chibi_tree.Root(); |
| 620 |
|
|
if( lsize != 0 ) |
| 621 |
|
|
{ |
| 622 |
|
|
construct_tree(root_leftbr_tray[k][0], bud_basket.begin(), leftbr_tray, rightbr_tray, tree_left); |
| 623 |
|
|
for(vector<Int4>::const_iterator it2=root_leftbr_tray[k].begin()+1; it2<root_leftbr_tray[k].end(); it2++) |
| 624 |
|
|
{ |
| 625 |
|
|
construct_tree(*it2, bud_basket.begin(), leftbr_tray, rightbr_tray, tree_left2); |
| 626 |
|
|
if( tree_left.Root().count_bud() < tree_left2.Root().count_bud() ) |
| 627 |
|
|
{ |
| 628 |
|
|
tree_left = tree_left2; |
| 629 |
|
|
} |
| 630 |
|
|
} |
| 631 |
|
|
if( tree_left.Root().Right() != it->iK2() ) tree_left.swapBranch(); |
| 632 |
|
|
chibi_tree.setRoot(node, tree_left.Root()); |
| 633 |
|
|
} |
| 634 |
|
|
else |
| 635 |
|
|
{ |
| 636 |
|
|
const NodeB node2(it->iK3(), it->iK2()); |
| 637 |
|
|
chibi_tree.setRoot(node, node2); |
| 638 |
|
|
} |
| 639 |
|
|
} |
| 640 |
|
|
else |
| 641 |
|
|
{ |
| 642 |
|
|
NodeB nodex = chibi_tree.Root(); |
| 643 |
|
|
nodex.swapBranch(); |
| 644 |
|
|
if( rsize != 0 ) |
| 645 |
|
|
{ |
| 646 |
|
|
construct_tree(root_rightbr_tray[k][0], bud_basket.begin(), leftbr_tray, rightbr_tray, tree_right); |
| 647 |
|
|
for(vector<Int4>::const_iterator it2=root_rightbr_tray[k].begin()+1; it2<root_rightbr_tray[k].end(); it2++) |
| 648 |
|
|
{ |
| 649 |
|
|
construct_tree(*it2, bud_basket.begin(), leftbr_tray, rightbr_tray, tree_right2); |
| 650 |
|
|
if( tree_right.Root().count_bud() < tree_right2.Root().count_bud() ) |
| 651 |
|
|
{ |
| 652 |
|
|
tree_right = tree_right2; |
| 653 |
|
|
} |
| 654 |
|
|
} |
| 655 |
|
|
if( tree_right.Root().Right() != it->iK1() ) tree_right.swapBranch(); |
| 656 |
|
|
chibi_tree.setRoot(tree_right.Root(), nodex); |
| 657 |
|
|
} |
| 658 |
|
|
else |
| 659 |
|
|
{ |
| 660 |
|
|
const NodeB nodex2(it->iK3(), it->iK1()); |
| 661 |
|
|
chibi_tree.setRoot(nodex2, nodex); |
| 662 |
|
|
} |
| 663 |
|
|
} |
| 664 |
|
|
|
| 665 |
|
|
chibi_tree.setSortingCriteria(); |
| 666 |
|
|
tree_tray2.insert(chibi_tree); |
| 667 |
|
|
if( (Int4)tree_tray2.size() > MAX_TREE ) tree_tray2.erase(--tree_tray2.end()); |
| 668 |
|
|
} |
| 669 |
|
|
#ifdef _OPENMP |
| 670 |
|
|
#pragma omp critical |
| 671 |
|
|
#endif |
| 672 |
|
|
{ |
| 673 |
|
|
tree_tray.insert(tree_tray.end(), tree_tray2.begin(), tree_tray2.end()); |
| 674 |
|
|
} |
| 675 |
|
|
} |
| 676 |
|
|
/* 2011.10.19 VIC Tamura */ |
| 677 |
|
|
CHECK_INTERRUPTION(); |
| 678 |
|
|
|
| 679 |
|
|
sort(tree_tray.begin(), tree_tray.end()); |
| 680 |
|
|
if( (Int4)tree_tray.size() > MAX_TREE ) tree_tray.resize(MAX_TREE); |
| 681 |
|
|
} |
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