• R/O
  • HTTP
  • SSH
  • HTTPS

tutorial: Commit

This repository is for tutorials of Eos.


Commit MetaInfo

Revision4b64a80810193c6a4ef8debb1f9b9d40b84f8845 (tree)
Time2014-09-17 09:52:58
Authorkinoshita-eos <kinoshita@yasu...>
Commiterkinoshita-eos

Log Message

Modify: Setting of -kV -Cs -df -Ain for CTFCorrection
modified: CTFCorrection/CTFCorrection2/Makefile
modified: CTFCorrection/CTFCorrection3/Makefile

Change Summary

Incremental Difference

--- a/CTFCorrection/CTFCorrection2/Makefile
+++ b/CTFCorrection/CTFCorrection2/Makefile
@@ -68,6 +68,12 @@ NSRATIO=0
6868 ### For mrcImageSiemensStar
6969 SSTAR_SHAPE=0
7070
71+## For mrcImageCTFObservation
72+CTF_KV=200
73+CTF_CS=2.1
74+CTF_DEFOCUS=27000
75+CTF_AIN=0.3
76+
7177 #### For Works ####
7278 JOP_NUM=-j 3
7379
@@ -131,7 +137,8 @@ Test::
131137 rm $*.$(INPUT_2D_EXT)tmp
132138
133139 .$(INPUT_2D_EXT).$(CTF_2D_EXT):
134- mrcImageCTFObservation -i $*.$(INPUT_2D_EXT) -o $*.$(CTF_2D_EXT)
140+ mrcImageCTFObservation -i $*.$(INPUT_2D_EXT) -o $*.$(CTF_2D_EXT) \
141+ -kV $(CTF_KV) -Cs $(CTF_CS) -df $(CTF_DEFOCUS) -Ain $(CTF_AIN);
135142
136143 .$(OUT_CTF_EXT).tiff:
137144 mrc2tiff -i $*.$(OUT_CTF_EXT) -o $*_ctf.tiff
--- a/CTFCorrection/CTFCorrection3/Makefile
+++ b/CTFCorrection/CTFCorrection3/Makefile
@@ -16,8 +16,11 @@
1616 -include CTFInfo1List
1717
1818 #### Definition ####
19-## For mrcImageCTFObservation
20-CTF_DEFOCUS=9000
19+## For mrcImageCTFObservation 2
20+CTF2_KV=200
21+CTF2_CS=2.1
22+CTF2_DEFOCUS=9000
23+CTF2_AIN=0.3
2124
2225 #### Rules of the list created ####
2326 ctfinfoauto2: $(FFTS:.fft=.ctfinfoauto2)
@@ -46,7 +49,8 @@ all1::
4649 make ImageAverage;
4750
4851 ProcessForInput2::
49- mrcImageCTFObservation -i $(INPUT).$(INPUT_2D_EXT) -o $(INPUT)-2.$(CTF_2D_EXT) -df $(CTF_DEFOCUS);
52+ mrcImageCTFObservation -i $(INPUT).$(INPUT_2D_EXT) -o $(INPUT)-2.$(CTF_2D_EXT) \
53+ -kV $(CTF2_KV) -Cs $(CTF2_CS) -df $(CTF2_DEFOCUS) -Ain $(CTF2_AIN);
5054 ln -s $(INPUT)-2.$(CTF_2D_EXT) $(INPUT)-2.mrc;
5155 mrc2tiff -i $(INPUT)-2.$(INPUT_2D_EXT) -o $(INPUT)-2_org.tiff;
5256 mrc2tiff -i $(INPUT)-2.$(CTF_2D_EXT) -o $(INPUT)-2_i.tiff -I;
Show on old repository browser