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tutorial: Commit

This repository is for tutorials of Eos.


Commit MetaInfo

Revision7f6e4694fa279e469afb45e95c46461834a64f24 (tree)
Time2014-10-09 16:55:08
Authorkinoshita-eos <kinoshita@yasu...>
Commiterkinoshita-eos

Log Message

Add: Support CTF for Grid or 1Point Image.(make all2D)
modified: CTFCorrection/CTFCorrection2/Makefile
modified: CTFCorrection/CTFCorrection2/Makefile.config

Change Summary

Incremental Difference

--- a/CTFCorrection/CTFCorrection2/Makefile
+++ b/CTFCorrection/CTFCorrection2/Makefile
@@ -10,6 +10,9 @@ CTF_2D_EXT=prectf
1010 FFT_2D_EXT=fft
1111 CTF_INFO_EXT=ctfinfo
1212 OUT_CTF_EXT=ctf
13+ONE=one
14+NUL=nul
15+GRID=grid
1316
1417 #### Suffixes rule ####
1518
@@ -19,8 +22,23 @@ OUT_CTF_EXT=ctf
1922 #### Definition ####
2023 CCD=14.0
2124
25+### For create mrc image
26+1SIZE_X=64
27+1SIZE_Y=64
28+1SIZE_Z=1
29+POINT_X=32
30+POINT_Y=32
31+POINT_Z=0
32+BACK_VALUE=0
33+LENGTH=1
34+POINT_VALUE=1
35+NUM_X=1
36+NUM_Y=1
37+NUM_Z=1
38+
2239 # Input FileName
2340 INPUT=Input
41+FILE_NAME=$(INPUT)
2442
2543 ### For mrcImageNoiseAdd
2644 NSRATIO=0
@@ -56,5 +74,14 @@ all2S::
5674 make TIF2CTF;
5775 make $(INPUT).tiff
5876
77+all2D::
78+ make NulImage;
79+ make 1PointImage;
80+ make GridImage;
81+ ln -s $(INPUT).$(GRID) $(INPUT).$(INPUT_2D_EXT)
82+ make ProcessForInput;
83+ make TIF2CTF;
84+ make $(INPUT).tiff
85+
5986 ##### Commands(Input to Output) #####
6087
\ No newline at end of file
--- a/CTFCorrection/CTFCorrection2/Makefile.config
+++ b/CTFCorrection/CTFCorrection2/Makefile.config
@@ -15,6 +15,7 @@ INPUT_3D_EXT=3d
1515
1616 #### INCLUDE ####
1717 -include ../CTFCorrection1/Makefile
18+-include ../../TIPS/CreateGridImage/Makefile.config
1819 -include INPUT_2D_LIST
1920 -include CTF_2D_LIST
2021 -include FFT_2D_LIST
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