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Project Description

Genpak is a small set of utilities designated to process DNA, RNA, and protein sequences in a very Un*x-like manner. This way, Genpak programs can be combined using pipes and redirections, as well as easily incorporated into CGI scripts. The utilities include a program for calculating GC content, Tm, translating DNA/RNA sequences into protein sequences, quick sequence retrieval, random sequence generation, and finding promoter sequences using a Hertz matrix.

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Information regarding Project Releases and Project Resources. Note that the information here is a quote from Freecode.com page, and the downloads themselves may not be hosted on OSDN.

2001-06-06 19:28
0.26

Two new utilities were added. One of them adjusts codon usage of an ORF to
reflect an optimal codon usage of a group of genes, and the other one is a tool
for calculating the codon usage deviation from a population of genes. Some
minor bugs were also fixed.
Tags: Minor feature enhancements

2001-02-15 21:18
0.25

This release fixes the broken gp_tm, the partly broken gp_primer, and other minor problems.
Tags: Minor bugfixes

2001-02-12 21:29
0.24

This release adds a program for predicting oligonucleotide stem-loop structures and dimeres.
Tags: Minor feature enhancements

2001-02-10 01:25
0.23

Major bugfixes, code cleanups, and some new features.
Tags: Major bugfixes

2001-01-30 15:12
0.20

Many bugs have been corrected, some utilities have been rewritten, and three new programs have been added.

Project Resources