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Project Description

Py_ContigViewer is a contig viewer, a stand alone
cross-platform desktop application that uses CAP3
alignments to graphically display and validate
candidate SNPs and InDels. It also simplifies PCR
oligo design in an interactive mode. The extended
mode provides the display of BLAST hits of
annotated sequences with intron positions for the
selected contig. Py_ContigViewer works in
conjunction with DIS (Deletion, Insertion,
Substitution) SNP discovery pipeline at
http://www.atgc.org/SNP_Discovery/.

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2004-03-26 05:50 Back to release list
Mar_25_2004

This version generates output files in FASTA format with
information about selected regions for oligo design that
can be used directly by the PerlPrimer program. The
search function for substrings was improved, and
displaying of GC% content for consensus sequences was
implemented.
Tags: Minor feature enhancements

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