SIBsim4

This release introduces a new command line switch, -S, which allows one to better fine tune how insertions/deletions are evaluated around potential splice junctions. A few problems, where spurious very small exons or large gaps in exons were incorrectly reported, have been fixed. The code was cleaned up to silence new warnings from the current GCC releases.

This release introduces a chimera detection feature.

This release fixes excessive run-time in some cases of partially repeated sequences. All users are encouraged to update.

This release adds a -s option to better control
how potential duplicated genes are detected,
instead of abusing the -f option.

This version introduces two new options, -c and
-f, which provide full control over how results
are filtered. This allows better detection of
duplicated genes, where duplicates are incomplete
or not well preserved.