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Project Description

The SIBsim4 project is based on sim4, which is a
program designed to align an expressed DNA
sequence with a genomic sequence, allowing for
introns. SIBsim4 is an extensive rewrite of the
sim4 program to improve execution speed and
provide more informative output.

System Requirements

System requirement is not defined
Information regarding Project Releases and Project Resources. Note that the information here is a quote from Freecode.com page, and the downloads themselves may not be hosted on OSDN.

2006-06-26 16:18
0.13

This update fixes some failures in detecting
duplicated genes. Another change is to obey the
default value of the K and C parameters instead of
trying to compute them on the fly. This last
change avoids dependancy on the math library.
Tags: Major bugfixes

2006-06-12 11:07
0.12

In some cases, SIBsim4 would erroneously detect
polyA tails in the middle of transcripts. This led
to truncated matches or even completely missing
matches in cases of repeated genes. This version
fixes those problems.
Tags: Major bugfixes

2006-03-14 20:06
0.11

Several bugs affecting the output results and linked with the new -o switch have been fixed.
Tags: Minor bugfixes

2006-01-17 19:36
0.9

A new -o switch has been added to allow the specification of the base coordinate of the DNA sequence on the chromosome. Code has been added to avoid the creation of artefactual, very small exons. Some bugs have been fixed, and some compiler warnings have been addressed.
Tags: Minor feature enhancements

2004-08-27 17:03
0.8

This release improves splicing code and error messages and adds some
code cleanups and bugfixes.
Tags: Minor feature enhancements

Project Resources

Download: TGZ Project Page Download: Bugtracker Download: Changelog Download: CVS Home Page Download: RPM