=プラグイン構成 ==プラグイン構成(ソース非公開版(旧 FIRST プログラム版)の旧バイナリ・インストーラとオープンソース版の比較対照表 ||||Component||Category||Plug-in name||Description||Binary by Closed Source Project||Open Source|||| ||||||Core||-||Full set of programs||IN|||||| ||||||||-||Environment configuration||IN|||||| ||||||||-||Java runtime library||IN|||||| ||||||||-||Library files for Java-codes||IN|||||| ||||||Document||-||"Release note etc."||IN|||||| ||||||||-||User's manual||IN|||||| ||||||||-||Developer's manual|||||||| ||||||File I/O||File I/O||File R/W basic function||IN||IN|||| ||||||||mzXml I/O||R/W mzXML files||IN||IN|||| ||||||mzml I/O||R/W mzML files||IN||IN|||| ||||||AIA Input||Reading AIA (netCDF) files||IN||IN|||| ||||||MSB I/O||R/W MSB files||IN||IN|||| ||||||Text I/O||R/W plain text files||IN||IN|||| ||||||Png Output||Writing PNG files||IN||IN|||| ||||||Shimadzu AXIMA||Reading Shimadzu/Kratos AXIMA data files|||||||| ||||||Shimadzu Lcms Input||Reading Shimadzu LCMS data files||IN||IN|||| ||||||Ab Qstar Input||Reading ABSciex Analyst/AnalystQS data files||IN|||||| ||||||Watewrs Input||Reading Waters MassLynx data files||IN|||||| ||||||Thermo I/O||Reading ThermoFisher Xcalibur data files||IN|||||| ||||||Agilent Input||Reading Agilent MassHunter data files||IN|||||| ||||Database||DB Manager||Internal database manager||IN||IN|||| ||||||SQLite||Database manager for SQLite||IN||IN|||| ||||||PostgreSQL||Database manager for PostgreSQL||IN||IN|||| ||||Network||Http Proxy||Configurating HTTP Proxy||IN||IN|||| ||||Viewer||MDI Child Frame||MDI window manager||IN||IN|||| ||||||Spectrum & Chromatogram Window Mode||Cordinator for Spectrum window and Chromatogram window||IN||IN|||| ||||||Profile Canvas||Displaying single window||IN||IN|||| ||||||Overlapping Canvas||Displaying overlapping windows||IN||IN|||| ||||||Vertical Box Canvas||Displaying windows in stacked format||IN||IN|||| ||||||Profile Drawer||Drawing waveform||IN||IN|||| ||||||Scale Drawer||Drawing axes and scales||IN||IN|||| ||||||Profile Range||Setting spectrum/chromatogram ranges||IN||IN|||| ||||||Datamap Canvas||Configuring heat map area||IN||IN|||| ||||||Datamap Drawer||Drawing heat maps||IN||IN|||| ||||||Sample 3D View||Drawing 3-D graphs||IN||IN|||| ||||||Data Map Range||Display range manager for data maps||IN||IN|||| ||||||First View||Display manager for opened data||IN||IN|||| ||||Spectrum/Chromatogram||Select Range||Sending spectrum/chromatogram information and specified ranges to plug-ins||IN||IN|||| ||||||Magnifying View||Magnifying specified area in the spectrum||IN||IN|||| ||||||Spectrum Changer||Changing displeyed spectrum||IN||IN|||| ||||||Spectrum Precursor Product Changer||Displaying precursor/product ion spectrum||IN||IN|||| ||||||Chromatogram Operation||Generating Mass Chromatograms/Base Peak Chromatograms||IN||IN|||| ||||||Spectra Search||Searching spectra||IN||IN|||| ||||||Raw Waveform||Displaying raw waveform data||IN||IN|||| ||||||Peak Waveform||Displaying peaks on waveforms||IN||IN|||| ||||Data Map||Data Map Filter||Filtering data for data map||IN||IN|||| ||||Pane||Sample Tree View||Sample Tree pane manager||IN||IN|||| ||||||Details View||Properties pane manager||IN||IN|||| ||||||XYData View||Points/Peaks pane manager||IN||IN|||| ||||||Spectra Grid View||Filtered Spectra pane manager||IN||IN|||| ||||||Log View||Diagnostic Log pane manager||IN||IN|||| ||||Peaks||Peak Picking||Detecting peaks||IN||IN|||| ||||||GOZAN||Peak detection by MWD algorithm|||||||| ||||||Centroid Mode Labeling||Peak detection by Centroid mode||IN||IN|||| ||||||Local Maximum Labeging||Peak detection by Local maximum mode||IN||IN|||| ||||||GION ||Peak detection by GION algorithm|||||||| ||||||EM Labeling||Peak detection by EM algorithm|||||||| ||||||Multi Algorithm Labeling||Peak detection by multiple algorithm||IN||IN|||| ||||||API Peak Detection||Application Programing Interface for peak detection||IN||IN|||| ||||||Spec Peak Filter Number Of Peaks||Selecting the specified number of highest peaks||IN||IN|||| ||||||MRM 3D||2-dimensional peak detection for MRM data||IN||IN|||| ||||||Default Charge||Configurating charge setting function||IN||IN|||| ||||||Simple Charge Detect||Detecting ion charges with isotopic peaks||IN||IN|||| ||||||Intensity Rate Charge Detector||Detecting ion charges with MS/MS spectrum distibution||IN||IN|||| ||||||Peak Search||Searching peaks||IN||IN|||| ||||||Peaks I/O||R/W peak data||IN||IN|||| ||||||Peak Edit||Editing peak properties||IN||IN|||| ||||||Mspeaks||Peak detection with Matlab mspeaks function||IN||IN|||| ||||||Mslowess||S/N filtering function with Matlab mslowness function||IN||IN|||| ||||||Peak Label Drawer||Drawing peak labels||IN||IN|||| ||||Quantitation||Matrix View||Displaying a peak matrix||IN||IN|||| ||||||Labeling And Merge||Finding peak position by peak detection||IN||IN|||| ||||||Merged Spectrum Peaks||Finding peak position with spectrum peaks||IN||IN|||| ||||||MRM Peak Finder||Finding peak position for MRM data||IN||IN|||| ||||||Peak Positions File Import||Importing peak position list||IN||IN|||| ||||||Simple Peak Position Appender||Manually specifying peak positions||IN||IN|||| ||||||Neighbor Peaks||Peak value calculation with neighbor peaks||IN||IN|||| ||||||Commons Math||Statistic analysis with Commons Math library||IN||IN|||| ||||||U Test||Mann-Whitney's u-test||IN||IN|||| ||||||Matrix Group Plot||Plotting group distribution of intensities/areas||IN||IN|||| ||||||Matrix Overlapping View||Displaying overlapping waveforms||IN||IN|||| ||||||Basic Scaling||Simple normalization of peak intensities||IN||IN|||| ||||||Log Scaling||Log-scale normalization of peak intensities|||||||| ||||||Vast Scaling||Vast-scale normalization of peak intensities|||||||| ||||||Pca Plugin||PCA analysis|||||||| ||||||PlsDa Plugin||PLS-DA analysis|||||||| ||||||Matrix Peaks Merge||Merging neighbor peaks on peak matrix||IN||IN|||| ||||Identification||Identification||Identification function manager|||||||| ||||||Mascot Search||Searching sequence database by Mascot|||||||| ||||||X Tandem||Searching sequence database by X!Tandem||IN||IN|||| ||||||Mass Bank||Support function for MassBank||IN||IN|||| ||||||MSn Search||Search engine with MSn spectra|||||||| ||||||Mascot PMF For LCMS||Mascot PMF search for LC-MS|||||||| ||||||PTM Librarian||PTM Librarian wrapper|||||||| ||||||TPP||TPP tool wrapper||IN||IN|||| ||||Basic Data Manipulation||Baseline Subtraction||Subtracting baseline values from spectrum waveforms||IN||IN|||| ||||||ABC Baseline Detection||Baseline detection algorithm ABC||IN||IN|||| ||||||BLT Baseline Detection||Baseline detection algorithm BLT|||||||| ||||||Linear Baseline Detection||Baseline detection algorithm Linear||IN||IN|||| ||||||Background Subtraction||Subtracting backgroud signals from spectrum waveforms||IN||IN|||| ||||||Filter||Filtering waveforms||IN||IN|||| ||||||Linear Filter||Filtering waveforms with Linear-mode||IN||IN|||| ||||||Window Filter||Filtering waveforms with window search||IN||IN|||| ||||||Wavelet Analysis||Wavelet analysis|||||||| ||||||Mz Range Filter||Filtering waveforms with m/z ranges||IN||IN|||| ||||||Msbackadj Baseline Detection||Detecting baseline with Matlab msbackadj function|||||||| ||||||Operation Manager||History recorder of waveform manipulation||IN||IN|||| ||||Advanced Data Manipulation||Normalization||Data normalization function||IN||IN|||| ||||||Alignment ||Retention time alignment function||IN||IN|||| ||||||Merged Spectrum||Merging spectra function||IN||IN|||| ||||||Composition||"Merging|| Subtracting or Dividing objective data"||IN||IN|||| ||||||Sample Merge||Merging sample data||IN||IN|||| ||||||Msms Spectra Merge||Merging MS/MS spectra function||IN||IN|||| ||||||Resampling||Resampling spectrum data points||IN||IN|||| ||||Shimadzu||Glycan Analysis||N-glycan structure assignment with diagnostic ions||IN||IN|||| ||||||Sample Tree Builder||Building sample tree||IN||IN|||| ||||||SIMSE||de novo sequencing tool|||||||| ||||||Compound Database||Basic compound database for SIMSE||IN||IN|||| ||||etc||Clipboard||Clipboard function||IN||IN|||| ||||||Settings||Environment settings||IN||IN|||| ||||||Help||Showing helps||IN||IN|||| ||||||Operation Log||Operation history function||IN||IN|||| ||||||PluginManager||Plug-in manager||IN||IN|||| ||||||Edit Sample User Properties||Editing user properties||IN||IN|||| ||||||Batch Service||Batch operation manager||IN||IN|||| ||||||Command Line Batch Service||Running specified batch jobs as commands in the background||IN||IN|||| ||||||Script Plugin||Script Console operation manager||IN||IN|||| ||||||Iron Python||Iron Python script interpreter||IN||IN|||| ||||||Simca Display||SIMCA P+ wrapper||IN||IN|||| ||||||Run2Xml||Utilizing Run2xml (Launchpad function)|||||||| ||||||Run2Xml Wrapper||Peak detection and waveform filtering function with Run2Xml|||||||| ||||||AB3D||Peak detection algorithm AB3D for quantification||IN||IN|||| ||||||AB3D (2)||Program files for AB3D algorithm||IN||IN|||| ||Sample Data||data||-||Sample data|||||||| ||Development||development tool kit||-||Library files for C/C++|||||||| ||||||-||Include files for C/C++|||||||| ||||||-||Setting files of VS wizard for C/C++|||||||| ||||||-||Install files of VS wizard for C/C++|||||||| ||||||-||VS wizard files for C#|||||||| ||||||-||Sample project files|||||||| ||Core libraries||||CoreFunctions||Fundamental function for C||||IN|||| ||||||CoreToolkits||Fundamental classes for C++||||IN|||| ||||||DataObjects||Basic data object||||IN|||| ||||||DataOperation||Basic data operation||||IN|||| ||||||DbTools||Internal database manager||||IN|||| ||||||EventManager||Event management||||IN|||| ||||||GLTools||3-D graphic management||||IN|||| ||||||IdentificationTools||Identification/quantification manager||||IN|||| ||||||ImageManager||Drawing/imaging manager||||IN|||| ||||||JavaTools||Java-code management library||||IN|||| ||||||NetworkTools||Network access function||||IN|||| ||||||NumericalTools||Numerical calculation function||||IN|||| ||||||PluginTools||Plug-in operation manager||||IN|||| ||||||WindowManager||Graphic User Interface library||||IN|||| ||||||XMLTools||XML file manager||||IN|||| ||||||CLRManager||.NET Framework wrapper (Basic function)||||IN|||| ||||||CLRPluginTools||.NET Framework wrapper (plug-in manager)||||IN|||| ||ExecutableFile||||mspp||||||IN|||| ||||||msppcmd||||||IN||||
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