| Revision | ac1bbf0bc4a835f7afe9150b30eb30153cc8a330 (tree) |
|---|---|
| Time | 2008-12-22 17:45:48 |
| Author | kmorimatsu <kmorimatsu@1ca2...> |
| Commiter | kmorimatsu |
NP_PubMed v0.1.8
template engine constructed.
Now supports Cell!
git-svn-id: https://svn.sourceforge.jp/svnroot/nucleus-jp/plugin@756 1ca29b6e-896d-4ea0-84a5-967f57386b96
NP_PubMed/trunk/NP_PubMed.php (diff) NP_PubMed/trunk/pubmed/index.php (diff) NP_PubMed/trunk/pubmed/template.php (diff) NP_PubMed/trunk/pubmed/templates/Cell.php (diff) NP_PubMed/trunk/pubmed/templates/PNAS.php (diff) NP_PubMed/trunk/pubmed/templates/default.php (diff)
NP_PubMed/trunk/spring/skinbackup.xml (diff)| @@ -3,8 +3,8 @@ class NP_PubMed extends NucleusPlugin { | ||
| 3 | 3 | function getName() { return 'NP_PubMed'; } |
| 4 | 4 | function getMinNucleusVersion() { return 330; } |
| 5 | 5 | function getAuthor() { return 'Katsumi'; } |
| 6 | - function getVersion() { return '0.1.7'; } | |
| 7 | - function getURL() {return 'http://hp.vector.co.jp/authors/VA016157/';} | |
| 6 | + function getVersion() { return '0.1.8'; } | |
| 7 | + function getURL() {return 'http://japan.nucleuscms.org/wiki/plugins:authors:katsumi';} | |
| 8 | 8 | function getDescription() { |
| 9 | 9 | return $this->getName().' plugin<br />'. |
| 10 | 10 | 'This plugin uses the query service of "Entrez Programming Utilities".<br />'. |
| @@ -31,8 +31,8 @@ class NP_PubMed extends NucleusPlugin { | ||
| 31 | 31 | ' manuscriptid int(11) not null auto_increment,'. |
| 32 | 32 | ' userid int(11) not null default 0,'. |
| 33 | 33 | ' manuscriptname varchar(200) not null default "New Manuscript",'. |
| 34 | - ' templatename varchar(200) not null default "default.template",'. | |
| 35 | - ' sortmethod varchar(40) not null default "author",'. | |
| 34 | + ' templatename varchar(200) not null default "default",'. | |
| 35 | + ' sortdata text not null default "",'. | |
| 36 | 36 | ' PRIMARY KEY manuscriptid(manuscriptid) '. |
| 37 | 37 | ') TYPE=MyISAM;'); |
| 38 | 38 | } |
| @@ -64,7 +64,7 @@ class NP_PubMed extends NucleusPlugin { | ||
| 64 | 64 | ); |
| 65 | 65 | } |
| 66 | 66 | function event_PreUpdateItem(&$data){ |
| 67 | - $ret=$this->event_PreAddItem(&$data); | |
| 67 | + $ret=$this->event_PreAddItem($data); | |
| 68 | 68 | $this->_updateManuscriptData($data['itemid']); |
| 69 | 69 | return $ret; |
| 70 | 70 | } |
| @@ -188,6 +188,12 @@ class NP_PubMed extends NucleusPlugin { | ||
| 188 | 188 | global $CONF,$manager,$blog,$member; |
| 189 | 189 | $mid=$member->getID(); |
| 190 | 190 | switch($mode=strtolower($mode)){ |
| 191 | + case 'getvar': | |
| 192 | + echo htmlspecialchars(getVar($p1),ENT_QUOTES); | |
| 193 | + break; | |
| 194 | + case 'postvar': | |
| 195 | + echo htmlspecialchars(postVar($p1),ENT_QUOTES); | |
| 196 | + break; | |
| 191 | 197 | case 'searchlink': |
| 192 | 198 | if (!$this->isAdmin()) return; |
| 193 | 199 | if (!$blog) return; |
| @@ -231,30 +237,50 @@ class NP_PubMed extends NucleusPlugin { | ||
| 231 | 237 | echo '<a href="http://www.ncbi.nlm.nih.gov/PubMed/" onclick="window.open(this.href,\'PubMed\');return false;">'. |
| 232 | 238 | htmlspecialchars(strlen($p1)?$p1:'PubMed',ENT_QUOTES).'</a>'; |
| 233 | 239 | break; |
| 234 | - case 'parse': case 'pageswitch': | |
| 240 | + case 'parse': | |
| 241 | + if (!$mid) return; | |
| 235 | 242 | if (!$blog) return; |
| 236 | - global $startpos; | |
| 237 | - $startpos=(int)$startpos; | |
| 238 | - $limit=(int)$p2; | |
| 239 | - $template=addslashes($p1); | |
| 240 | - $query=$blog->getSqlBlog(''); | |
| 241 | - $query=preg_replace('/ORDER[\s]+BY[\s][\s\.a-z0-9_]*(ASC|DESC)$/i','ORDER BY i.ititle ASC',$query); | |
| 242 | - switch($mode){ | |
| 243 | - case 'pageswitch': | |
| 244 | - $ps=&$manager->getPlugin('NP_PageSwitch'); | |
| 245 | - $ps->setQuery($query); | |
| 246 | - break; | |
| 247 | - case 'parse': | |
| 248 | - default: | |
| 249 | - $blog->showUsingQuery($template, $query.' LIMIT '.$startpos.','.$limit, '', 1, 1); | |
| 243 | + $msid=intGetVar('manuscriptid'); | |
| 244 | + if (!$msid) return; | |
| 245 | + $query='SELECT i.ibody as body, i.ititle as title, i.imore as more'. | |
| 246 | + ' FROM '.sql_table('item').' as i, '. | |
| 247 | + sql_table('plugin_pubmed_references').' as r,'. | |
| 248 | + sql_table('plugin_pubmed_manuscripts').' as m'. | |
| 249 | + ' WHERE i.inumber=r.itemid'. | |
| 250 | + ' AND r.manuscriptid='.(int)$msid. | |
| 251 | + ' AND m.manuscriptid='.(int)$msid. | |
| 252 | + ' AND m.userid='.(int)$mid. | |
| 253 | + ' ORDER BY i.ititle ASC'; | |
| 254 | + | |
| 255 | + // Construct template object. | |
| 256 | + require_once($this->getDirectory().'template.php'); | |
| 257 | + $res=sql_query('SELECT *'. | |
| 258 | + ' FROM '.sql_table('plugin_pubmed_manuscripts'). | |
| 259 | + ' WHERE manuscriptid='.(int)$msid. | |
| 260 | + ' AND userid='.(int)$mid); | |
| 261 | + $row=mysql_fetch_assoc($res); | |
| 262 | + if (!$row) return; | |
| 263 | + $tobj=PUBMED_TEMPLATE_BASE::getTemplate($row['templatename'],$row['sortdata']); | |
| 264 | + if (!$tobj) { | |
| 265 | + echo 'The template, "'.htmlspecialchars($row['templatename']).'" cannot be found'; | |
| 250 | 266 | break; |
| 251 | 267 | } |
| 268 | + // Set all the data. | |
| 269 | + $res=sql_query($query); | |
| 270 | + while($row=mysql_fetch_assoc($res)){ | |
| 271 | + $tobj->setData($row['more']); | |
| 272 | + } | |
| 273 | + // Sort the papers | |
| 274 | + $tobj->sortPapers(); | |
| 275 | + // Let's parse, finally. | |
| 276 | + $tobj->parse_all(); | |
| 277 | + break; | |
| 252 | 278 | case 'manuscriptlist': |
| 279 | + | |
| 253 | 280 | if (!$mid) return; |
| 254 | 281 | if (!$blog) return; |
| 255 | 282 | $blogid=$blog->getID(); |
| 256 | 283 | $template =& $manager->getTemplate($p1); |
| 257 | - //print_r($template['CATLIST_LISTITEM']);exit; | |
| 258 | 284 | $res=sql_query('SELECT manuscriptname as name, manuscriptid as id'. |
| 259 | 285 | ' FROM '.sql_table('plugin_pubmed_manuscripts'). |
| 260 | 286 | ' WHERE userid='.(int)$mid); |
| @@ -269,14 +269,13 @@ class PubMedAdmin { | ||
| 269 | 269 | global $member,$manager; |
| 270 | 270 | $mid=$member->getID(); |
| 271 | 271 | echo '<a href="'.$this->oPluginAdmin->plugin->getAdminURL().'?blogid='.(int)$this->blogid.'&action=manuscriptlist">Refresh</a><br />'; |
| 272 | - echo '<table><tr><th>manuscript</th><th>template</th><th>sort method</th><th colspan="2"> </th></tr>'; | |
| 272 | + echo '<table><tr><th>manuscript</th><th>template</th><th colspan="2"> </th></tr>'; | |
| 273 | 273 | $res=sql_query('SELECT * FROM '.sql_table('plugin_pubmed_manuscripts'). |
| 274 | 274 | ' WHERE userid='.(int)$mid); |
| 275 | 275 | while($row=mysql_fetch_assoc($res)){ |
| 276 | 276 | echo '<tr>'; |
| 277 | 277 | echo '<td>'.htmlspecialchars($row['manuscriptname']).'</td>'; |
| 278 | 278 | echo '<td>'.htmlspecialchars($row['templatename']).'</td>'; |
| 279 | - echo '<td>'.htmlspecialchars($row['sortmethod']).'</td>'; | |
| 280 | 279 | ?> |
| 281 | 280 | <td><form method="post" action=""> |
| 282 | 281 | <input type="hidden" name="action" value="deletemanuscript" /> |
| @@ -379,24 +378,26 @@ Are you sure? | ||
| 379 | 378 | if (!$mname) $mname=$row['manuscriptname']; |
| 380 | 379 | $mname=$this->_checkmanuscriptname($mname,$manuscriptid); |
| 381 | 380 | if (!$mname) return $this->manuscriptlist(); |
| 382 | - switch($sort=postVar('sortmethod')){ | |
| 383 | - case 'author': | |
| 384 | - case 'manual': | |
| 385 | - break; | |
| 386 | - default: | |
| 387 | - $sort=$row['sortmethod']; | |
| 388 | - } | |
| 389 | - $template='default.template'; | |
| 381 | + $template=$row['templatename']; | |
| 390 | 382 | if (postVar('sure')=='yes') { |
| 383 | + $template=postVar('templatename'); | |
| 391 | 384 | sql_query('UPDATE '.sql_table('plugin_pubmed_manuscripts').' SET'. |
| 392 | 385 | ' manuscriptname="'.addslashes($mname).'",'. |
| 393 | - ' templatename="'.addslashes($template).'",'. | |
| 394 | - ' sortmethod="'.addslashes($sort).'"'. | |
| 386 | + ' templatename="'.addslashes($template).'"'. | |
| 395 | 387 | ' WHERE manuscriptid='.(int)$manuscriptid. |
| 396 | 388 | ' AND userid='.(int)$mid); |
| 397 | 389 | return $this->manuscriptlist(); |
| 398 | 390 | } |
| 399 | - | |
| 391 | + // Get template files | |
| 392 | + $templates=array(); | |
| 393 | + $d=dir(dirname(__FILE__).'/templates/'); | |
| 394 | + while (false !== ($entry = $d->read())) { | |
| 395 | + if (!preg_match('/^(.+)\.php$/',$entry,$m)) continue; | |
| 396 | + if ($m[1]!='default') $templates[]=$m[1]; | |
| 397 | + } | |
| 398 | + sort($templates); | |
| 399 | + array_unshift($templates,'default'); | |
| 400 | +$d->close(); | |
| 400 | 401 | ?> |
| 401 | 402 | <form method="post" action=""> |
| 402 | 403 | <input type="hidden" name="action" value="editmanuscript" /> |
| @@ -408,13 +409,19 @@ Are you sure? | ||
| 408 | 409 | <tr><td>Manuscript name:</td> |
| 409 | 410 | <td><input type="text" name="manuscriptname" value="<?php echo htmlspecialchars($mname); ?>" /></td></tr> |
| 410 | 411 | <tr><td>Template:</td> |
| 411 | -<td><input type="text" name="tamplatename" value="<?php echo htmlspecialchars($template); ?>" /></td></tr> | |
| 412 | -<tr><td>Sort method:</td> | |
| 413 | -<td><select name="sortmethod"> | |
| 414 | -<option value="author" <?php if ($sort=='author') echo 'selected="selected"'; ?> >author</option> | |
| 415 | -<option value="manual" <?php if ($sort=='manual') echo 'selected="selected"'; ?> >manual</option> | |
| 412 | +<!-- td><input type="text" name="templatename" value="<?php echo htmlspecialchars($template); ?>" /></td></tr --> | |
| 413 | +<td><select name="templatename"> | |
| 414 | +<?php | |
| 415 | + foreach($templates as $temp){ | |
| 416 | + $temp=htmlspecialchars($temp,ENT_QUOTES); | |
| 417 | + echo '<option value="'.$temp.'"'. | |
| 418 | + ($template==$temp ? ' selected="selected"' : ''). | |
| 419 | + '>'.$temp."</option>\n"; | |
| 420 | + } | |
| 421 | +?> | |
| 416 | 422 | </select></td> |
| 417 | -</tr></table> | |
| 423 | +</tr> | |
| 424 | +</table> | |
| 418 | 425 | <input type="submit" value="Edit" /> |
| 419 | 426 | </form> |
| 420 | 427 | <?php |
| @@ -0,0 +1,205 @@ | ||
| 1 | +<?php | |
| 2 | + | |
| 3 | +class PUBMED_TEMPLATE_BASE { | |
| 4 | + /* | |
| 5 | + * This class must be inhelited by PUBMED_TEMPLATE class. | |
| 6 | + * Note that PHP 5 is needed. | |
| 7 | + */ | |
| 8 | + /* | |
| 9 | + * Default methods follow. | |
| 10 | + * These methods will be overrided in PUBMED_TEMPLATE class. | |
| 11 | + */ | |
| 12 | + public function sortPapers(){ | |
| 13 | + $this->sortByAuthorName(); | |
| 14 | + } | |
| 15 | + public function parse_header(){ | |
| 16 | + return '<br />'; | |
| 17 | + } | |
| 18 | + public function parse_footer(){ | |
| 19 | + return '<br />'; | |
| 20 | + } | |
| 21 | + public function parse($num,$pmid,$xml,$authors,$year,$journal,$volume,$pages,$title){ | |
| 22 | + return <<<END | |
| 23 | + | |
| 24 | +{$this->parse_authors($authors)} ({$year})<br /> | |
| 25 | +<i>{$journal}</i> <b>{$volume}</b>, {$pages}<br /> | |
| 26 | +{$title}<br /> | |
| 27 | +<br /> | |
| 28 | +END; | |
| 29 | + } | |
| 30 | + public function parse_authors($authors, $and=', and '){ | |
| 31 | + $num=count($authors); | |
| 32 | + switch($num){ | |
| 33 | + case 1: | |
| 34 | + $result=$this->parse_author($authors[0]); | |
| 35 | + break; | |
| 36 | + case 2: | |
| 37 | + $result=$this->parse_author($authors[0]).$and.$this->parse_author($authors[1]); | |
| 38 | + break; | |
| 39 | + default: | |
| 40 | + $result=$this->parse_author($authors[0]); | |
| 41 | + for($i=1;$i<$num;$i++){ | |
| 42 | + if ($i==1) $result.=', '; | |
| 43 | + elseif ($i==$num-1) $result.=$and; | |
| 44 | + $result.=$this->parse_author($authors[$i]); | |
| 45 | + } | |
| 46 | + break; | |
| 47 | + } | |
| 48 | + return htmlspecialchars($result); | |
| 49 | + } | |
| 50 | + public function parse_author($author){ | |
| 51 | + $result=$author->LastName.', '; | |
| 52 | + $initials=$author->Initials; | |
| 53 | + for($i=0;$i<strlen($initials);$i++) $result.=substr($initials,$i,1).'.'; | |
| 54 | + return $result; | |
| 55 | + } | |
| 56 | + /* | |
| 57 | + * Following methods shouldn't be overrided. | |
| 58 | + */ | |
| 59 | + protected $sorttext='',$sortdata=array(),$data=array(); | |
| 60 | + public static function getTemplate($template,$sorttext){ | |
| 61 | + // Static method. | |
| 62 | + // Define PUBLED_TEMPLATE class | |
| 63 | + if (!preg_match('/^[a-z0-9A-Z_]+$/',$template)) exit('Bad template name!'); | |
| 64 | + $file=dirname(__FILE__)."/templates/{$template}.php"; | |
| 65 | + if (!file_exists($file)) return false; | |
| 66 | + require_once($file); | |
| 67 | + $obj = new PUBMED_TEMPLATE; | |
| 68 | + $obj->sorttext=$sorttext; | |
| 69 | + return $obj; | |
| 70 | + } | |
| 71 | + public final function setData($more){ | |
| 72 | + // $more is the $item->more. | |
| 73 | + if (!preg_match('#<MedlineCitation[^>]*>([\s\S]*?)</MedlineCitation>#',$more,$m)) return; | |
| 74 | + $xml="<?xml version='1.0'?>\r\n<document>\r\n$m[1]\r\n</document>"; | |
| 75 | + $xml=simplexml_load_string($xml); | |
| 76 | + $pmid=(int)$xml->PMID; | |
| 77 | + $this->data[$pmid]=$xml; | |
| 78 | + //echo $xml->Article->AuthorList->Author[0]->LastName; | |
| 79 | + //echo "<br />\n"; | |
| 80 | + } | |
| 81 | + public final function parse_all(){ | |
| 82 | + echo $this->parse_header(); | |
| 83 | + $num=0; | |
| 84 | + foreach($this->sortdata as $pmid) { | |
| 85 | + $xml=$this->data[$pmid]; | |
| 86 | + $num++; | |
| 87 | + // Get year | |
| 88 | + $year=$xml->Article->Journal->JournalIssue->PubDate->Year; | |
| 89 | + // Get journal name | |
| 90 | + $journal=$xml->Article->Journal->ISOAbbreviation; | |
| 91 | + // Get volume | |
| 92 | + $volume=$xml->Article->Journal->JournalIssue->Volume; | |
| 93 | + // Get paper title | |
| 94 | + $title=$xml->Article->ArticleTitle; | |
| 95 | + if (substr($title,-1,1)!=='.') $title.='.'; | |
| 96 | + // Get the start and end pages | |
| 97 | + $pages=explode('-',(string)$xml->Article->Pagination->MedlinePgn); | |
| 98 | + $pages=$pages[0].'-'.substr($pages[0],0,strlen($pages[0])-strlen($pages[1])).$pages[1]; | |
| 99 | + // Let's parse the citation | |
| 100 | + echo $this->parse( (int)$num,(int)$pmid,$xml,$xml->Article->AuthorList->Author | |
| 101 | + ,htmlspecialchars($year) // Don't use (int) because it may be like 2008a | |
| 102 | + ,htmlspecialchars($journal) | |
| 103 | + ,(int)$volume | |
| 104 | + ,htmlspecialchars($pages) | |
| 105 | + ,htmlspecialchars($title) | |
| 106 | + ); | |
| 107 | + } | |
| 108 | + echo $this->parse_footer(); | |
| 109 | + } | |
| 110 | + /* Sort methods follow. | |
| 111 | + * note that these methods will be called from "sortPapers" method | |
| 112 | + */ | |
| 113 | + public final function manualSort(){ | |
| 114 | + // Set the sortdata array. | |
| 115 | + $lines=preg_split('/[\r\n]/',$this->sorttext,-1); | |
| 116 | + $result=array(); | |
| 117 | + foreach($lines as $line){ | |
| 118 | + if (!preg_match('/^[\s]*PMID:[\s]*([0-9]+)/',$line,$m)) continue; | |
| 119 | + $result[]=$m[1]; | |
| 120 | + } | |
| 121 | + $this->sortdata=$result; | |
| 122 | + } | |
| 123 | + public final function sortByAuthorName(){ | |
| 124 | + $citations=array(); | |
| 125 | + $papers=array(); | |
| 126 | + $i=0; | |
| 127 | + foreach($this->data as $pmid=>&$xml){ | |
| 128 | + $i++; | |
| 129 | + // Get date | |
| 130 | + $year=(int)$xml->Article->Journal->JournalIssue->PubDate->Year; | |
| 131 | + $month=(string)$xml->Article->Journal->JournalIssue->PubDate->Month; | |
| 132 | + $month=$this->month($month); | |
| 133 | + $month=$month<10 ? "0$month" : "$month"; | |
| 134 | + $day=(int)$xml->Article->Journal->JournalIssue->PubDate->Day; | |
| 135 | + $day=$day<10 ? "0$day" : "$day"; | |
| 136 | + $date="$year-$month-$day"; | |
| 137 | + // Get Authors | |
| 138 | + $authors=$xml->Article->AuthorList->Author; | |
| 139 | + $firstauthor=$authors[0]->LastName.', '.$authors[0]->Initials; | |
| 140 | + $authornum=count($authors); | |
| 141 | + switch($authornum){ | |
| 142 | + case 1: | |
| 143 | + $citation=$authors[0]->LastName.", $year"; | |
| 144 | + break; | |
| 145 | + case 2: | |
| 146 | + $citation=$authors[0]->LastName.' and '.$authors[1]->LastName.", $year"; | |
| 147 | + break; | |
| 148 | + default: | |
| 149 | + $citation=$authors[0]->LastName." et al., $year"; | |
| 150 | + break; | |
| 151 | + } | |
| 152 | + if (!isset($citations[$citation])) $citations[$citation]=array(); | |
| 153 | + $citations[$citation][]=$pmid; | |
| 154 | + // Construct the sort key and cache data | |
| 155 | + $key="$firstauthor $year $citation $date $i"; | |
| 156 | + $papers[$key]=$pmid; | |
| 157 | + } | |
| 158 | + // Modify Year (for example, 2008 => 2008a, 2008b, etc. | |
| 159 | + $abc='abcdefghijklmnopqrstuvwxyz'; | |
| 160 | + foreach($citations as $key=>$value){ | |
| 161 | + if (count($value)<2) continue; | |
| 162 | + for ($i=0;$i<count($value);$i++){ | |
| 163 | + $pmid=$value[$i]; | |
| 164 | + $year=(int)$this->data[$pmid]->Article->Journal->JournalIssue->PubDate->Year; | |
| 165 | + $this->data[$pmid]->Article->Journal->JournalIssue->PubDate->Year=(string)$year.substr($abc,$i,1); | |
| 166 | + } | |
| 167 | + } | |
| 168 | + // Sort the data | |
| 169 | + ksort($papers); | |
| 170 | + // Let's get the result. | |
| 171 | + $result=array(); | |
| 172 | + foreach($papers as $pmid) $result[]=$pmid; | |
| 173 | + $this->sortdata=$result; | |
| 174 | + } | |
| 175 | + protected final function month($month){ | |
| 176 | + if (is_numeric($month)) return (int)$month; | |
| 177 | + switch(strtolower($month)){ | |
| 178 | + case 'january': | |
| 179 | + case 'jan': return 1; | |
| 180 | + case 'february': | |
| 181 | + case 'feb': return 2; | |
| 182 | + case 'march': | |
| 183 | + case 'mar': return 3; | |
| 184 | + case 'april': | |
| 185 | + case 'apr': return 4; | |
| 186 | + case 'may': return 5; | |
| 187 | + case 'june': | |
| 188 | + case 'jun': return 6; | |
| 189 | + case 'july': | |
| 190 | + case 'jul': return 7; | |
| 191 | + case 'august': | |
| 192 | + case 'aug': return 8; | |
| 193 | + case 'september': | |
| 194 | + case 'sep': return 9; | |
| 195 | + case 'october': | |
| 196 | + case 'oct': return 10; | |
| 197 | + case 'november': | |
| 198 | + case 'nov': return 11; | |
| 199 | + case 'december': | |
| 200 | + case 'dec': return 12; | |
| 201 | + default: return 0; | |
| 202 | + } | |
| 203 | + } | |
| 204 | + | |
| 205 | +} | |
| \ No newline at end of file |
| @@ -0,0 +1,12 @@ | ||
| 1 | +<?php | |
| 2 | + | |
| 3 | +class PUBMED_TEMPLATE extends PUBMED_TEMPLATE_BASE { | |
| 4 | + public function parse($num,$pmid,$xml,$authors,$year,$journal,$volume,$pages,$title){ | |
| 5 | + return <<<END | |
| 6 | + | |
| 7 | +{$this->parse_authors($authors)} ({$year}). {$title} {$journal} <i>{$volume}</i>, {$pages}<br /> | |
| 8 | +<br /> | |
| 9 | + | |
| 10 | +END; | |
| 11 | + } | |
| 12 | +} | |
| \ No newline at end of file |
| @@ -0,0 +1,19 @@ | ||
| 1 | +<?php | |
| 2 | + | |
| 3 | +class PUBMED_TEMPLATE extends PUBMED_TEMPLATE_BASE { | |
| 4 | + public function parse($num,$pmid,$xml,$authors,$year,$journal,$volume,$pages,$title){ | |
| 5 | + $year=(int)$year; | |
| 6 | + return <<<END | |
| 7 | + | |
| 8 | +{$this->parse_authors($authors,', & ')} ({$year}). {$journal} <b>{$volume}</b>, {$pages}<br /> | |
| 9 | +<br /> | |
| 10 | + | |
| 11 | +END; | |
| 12 | + } | |
| 13 | + public function parse_author($author){ | |
| 14 | + $result=$author->LastName.', '; | |
| 15 | + $initials=$author->Initials; | |
| 16 | + for($i=0;$i<strlen($initials);$i++) $result.=substr($initials,$i,1).'. '; | |
| 17 | + return substr($result,0,strlen($result)-1); | |
| 18 | + } | |
| 19 | +} | |
| \ No newline at end of file |
| @@ -0,0 +1,5 @@ | ||
| 1 | +<?php | |
| 2 | + | |
| 3 | +class PUBMED_TEMPLATE extends PUBMED_TEMPLATE_BASE { | |
| 4 | + /* the default template uses everything from BASE class */ | |
| 5 | +} | |
| \ No newline at end of file |
| @@ -209,18 +209,9 @@ Website: <a href="<%member(url)%>"><%member(url)%></a> | ||
| 209 | 209 | <div id="container"> |
| 210 | 210 | <div class="content"> |
| 211 | 211 | |
| 212 | -<%PubMed(PageSwitch,,50)%> | |
| 213 | -<%if(PageSwitch,limit,50)%> | |
| 214 | -<div style="text-align:right;">Pages: | |
| 215 | -<%PageSwitch(prev,prev)%> | |
| 216 | -<%PageSwitch(index,2)%> | |
| 217 | -<%PageSwitch(next,next)%> | |
| 218 | -Page <%PageSwitch(num)%> of <%PageSwitch(total)%> | |
| 219 | -</div> | |
| 220 | -<%endif%> | |
| 221 | - | |
| 222 | -<%PubMed(parse,spring/index,50)%> | |
| 212 | +<%PubMed(parse)%> | |
| 223 | 213 | |
| 214 | +<%endif%> | |
| 224 | 215 | </div> |
| 225 | 216 | </div> |
| 226 | 217 |
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