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RECLU is a reproducible clustering pipeline with multiple scales using capped analysis of gene expression (CAGE). This program discoveries numerous alternative transcription start sites (TSSs) with the biological implication for your sample. This directory contains the standalone program.

System Requirements

RECLU is a reproducible clustering pipeline with multiple scales for capped analysis of gene expression (CAGE) datasets.
This package contains the below files:
idr_paraclu_pipeline.tar.bz2

idr_paraclu_pipeline.tar.bz2
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This archive file includes standalone programs to do hirarchical clustering.
This program needs the following softwares installed on your computer.
- R (http://cran.r-project.org/)
- SAMtools (http://samtools.sourceforge.net/)
- BEDtools (http://code.google.com/p/bedtools/)
For more detail, refer to the README.txt file in the archive file.

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