MiRDeep*: An Integrated Application Tool For MiRNA Identification From RNA Sequencing Data.
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737.
please find miRPlant in sourceforge for plant miRNA prediction.