Genomic changes in Paratyphi A during 450 years of global spread of enteric fever
Latest 5 files |
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| Name | Size | Date | Download count |
| readme.RHMM_snp_allocate | 4.0 KB | 2018-04-06 20:53 | 11 |
| RecHMM_v1.01.R | 18.2 KB | 2014-11-11 21:27 | 18 |
| RecHMM.R | 18.1 KB | 2014-10-31 04:50 | 84 |
| RHMM_snp_allocate_old.R | 6.9 KB | 2014-10-24 23:22 | 9 |
| RHMM_snp_allocate.R | 7.3 KB | 2014-10-24 23:22 | 17 |
All Files |
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| RecHMM | |||
| readme.RHMM_snp_allocate | 4.0 KB | 2018-04-06 20:53 | 11 |
| RecHMM_v1.01.R | 18.2 KB | 2014-11-11 21:27 | 18 |
| RecHMM.R | 18.1 KB | 2014-10-31 04:50 | 84 |
| RHMM_snp_allocate_old.R | 6.9 KB | 2014-10-24 23:22 | 9 |
| RHMM_snp_allocate.R | 7.3 KB | 2014-10-24 23:22 | 17 |
| RecHMM.documents.pdf | 98.9 KB | 2014-04-05 03:08 | 16 |
| readme.txt | 1.6 KB | 2014-04-05 03:10 | 7 |
| Examples | |||
| RecHMM_expandTree_example | |||
| test_RHMM.command | 0.9 KB | 2014-04-05 03:09 | 4 |
| test_expandTree.command | 0.1 KB | 2014-04-05 03:09 | 4 |
| sim.200.50.xmfa | 97.7 KB | 2014-04-05 03:09 | 2 |
| sim.200.50.snp | 2.8 KB | 2014-04-05 03:09 | 4 |
| sim.200.50.region | 8 B | 2014-04-05 03:09 | 3 |
| sim.200.50.model | 1.4 KB | 2014-04-05 03:09 | 2 |
| sim.200.50.local | 23.1 KB | 2014-04-05 03:09 | 2 |
| sim.200.50.expandTree | 0.3 KB | 2014-04-05 03:09 | 3 |
| sim.200.50.clonal.branchLabel | 0.8 KB | 2014-04-05 03:09 | 4 |
| sim.200.50.clonal | 0.5 KB | 2014-04-05 03:09 | 3 |
| DHMM_example | |||
| test_DHMM.command | 0.5 KB | 2014-03-08 02:52 | 3 |
| ParaA.region.step1.stderr | 0.1 KB | 2014-03-08 02:52 | 3 |
| ParaA.region.site | 2.4 MB | 2014-03-08 02:52 | 3 |
| ParaA.region.mut | 1.7 KB | 2014-03-08 02:52 | 1 |
| ParaA.region.gg | 9.3 KB | 2014-03-08 02:52 | 2 |
| ParaA.region.fas | 14.7 MB | 2014-03-08 02:52 | 2 |
| MUMmer_filter_example | |||
| test_MUMmer_filter.command | 0.3 KB | 2014-03-08 02:52 | 2 |
| FM200053.fna | 4.5 MB | 2014-03-08 02:52 | 6 |
| FM200053.example.map.fas | 4.5 MB | 2014-03-08 02:52 | 2 |
| FM200053.example.map | 1.1 KB | 2014-03-08 02:52 | 3 |
| FM200053.example.delta2 | 1.3 KB | 2014-03-08 02:52 | 2 |
| FM200053.example.delta | 4.2 KB | 2014-03-08 02:52 | 3 |
| CP000026.fna | 4.5 MB | 2014-03-08 02:51 | 4 |
| ExpandTree | |||
| ExpandTree.R | 9.9 KB | 2014-03-08 02:53 | 1 |
| ExpandTree.documents.pdf | 65.9 KB | 2014-03-07 03:02 | 9 |
| DHMM | |||
| DHMM_prepare.pl | 8.3 KB | 2014-03-08 02:53 | 5 |
| DHMM.R | 10.7 KB | 2014-03-08 02:53 | 2 |
| DHMM.documents.pdf | 88.5 KB | 2014-03-07 03:03 | 20 |
| MUMmer_filter | |||
| MUMmer_filter.documents.pdf | 40.6 KB | 2014-03-06 22:57 | 20 |
| mummer_strict_filter.pl | 10.0 KB | 2014-03-05 01:17 | 0 |
| mummer_aln_extract.pl | 3.8 KB | 2014-03-05 01:17 | 3 |
