Variant detection in massively parallel sequencing. For one sample, calls SNPs, indels, and consensus genotypes. For tumor-normal pairs, further classifies each variant as Germline, Somatic, or LOH, and also detects somatic copy number changes.
Latest 5 files |
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| Name | Size | Date | Download count |
| VarScan.v2.4.0.description.txt | 4.4 KB | 2015-08-21 05:46 | 40 |
| VarScan.v2.3.9.jar | 108.8 KB | 2015-06-04 04:59 | 134 |
| VarScan.v2.3.9.description.txt | 3.5 KB | 2015-06-04 04:59 | 12 |
| VarScan.v2.3.9.source.jar | 194.4 KB | 2015-06-04 04:59 | 40 |
| VarScan.v2.3.8.jar | 108.8 KB | 2015-04-30 07:08 | 27 |
All Files |
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| VarScan.v2.4.0.description.txt | 4.4 KB | 2015-08-21 05:46 | 40 |
| VarScan.v2.3.9.jar | 108.8 KB | 2015-06-04 04:59 | 134 |
| VarScan.v2.3.9.description.txt | 3.5 KB | 2015-06-04 04:59 | 12 |
| VarScan.v2.3.9.source.jar | 194.4 KB | 2015-06-04 04:59 | 40 |
| VarScan.v2.3.8.jar | 108.8 KB | 2015-04-30 07:08 | 27 |
| VarScan.v2.3.8.source.jar | 194.4 KB | 2015-04-30 07:08 | 6 |
| VarScan.v2.3.8.description.txt | 3.1 KB | 2015-04-30 07:07 | 6 |
| VarScan.v2.3.7.jar | 100.2 KB | 2014-07-16 06:00 | 46 |
| VarScan.v2.3.7.source.jar | 179.1 KB | 2014-07-16 06:00 | 16 |
| VarScan.v2.3.7.description.txt | 1.7 KB | 2014-07-16 05:59 | 20 |
| VarScan.v2.3.6.jar | 100.0 KB | 2013-07-30 06:45 | 46 |
| VarScan.v2.3.6.source.jar | 178.7 KB | 2013-07-30 06:44 | 16 |
| VarScan.v2.3.6.description.txt | 3.5 KB | 2013-07-30 06:44 | 8 |
| VarScan.v2.3.5.jar | 87.0 KB | 2013-03-21 07:46 | 15 |
| VarScan.v2.3.5.source.jar | 155.3 KB | 2013-03-21 07:46 | 9 |
| VarScan.v2.3.5.description.txt | 1.5 KB | 2013-03-21 07:46 | 4 |
| VarScan.v2.3.4.jar | 86.3 KB | 2013-01-31 07:54 | 9 |
| VarScan.v2.3.4.source.jar | 153.6 KB | 2013-01-31 07:53 | 4 |
| VarScan.v2.3.4.description.txt | 0.8 KB | 2013-01-31 07:53 | 5 |
| VarScan.v2.3.3.jar | 86.1 KB | 2012-11-09 03:43 | 8 |
| VarScan.v2.3.3.description.txt | 0.8 KB | 2012-11-09 03:42 | 2 |
| VarScan.v2.3.3.source.jar | 153.2 KB | 2012-11-09 03:42 | 6 |
| VarScan.v2.3.2.description.txt | 0.6 KB | 2012-09-01 04:18 | 4 |
| VarScan.v2.3.2.jar | 85.6 KB | 2012-09-01 04:14 | 26 |
| VarScan.v2.3.2.source.jar | 152.4 KB | 2012-09-01 04:13 | 3 |
| VarScan.v2.3.1.readme.txt | 1.0 KB | 2012-08-10 06:37 | 8 |
| VarScan.v2.3.1.jar | 85.1 KB | 2012-08-10 06:36 | 7 |
| VarScan.v2.3.1.source.jar | 151.6 KB | 2012-08-10 06:35 | 2 |
| VarScan.v2.2.11.jar | 80.6 KB | 2012-05-02 00:10 | 4 |
| VarScan.v2.2.11.source.jar | 143.4 KB | 2012-05-02 00:10 | 4 |
| VarScan.v2.2.10.jar | 79.7 KB | 2012-03-24 05:31 | 1 |
| VarScan.v2.2.10.source.jar | 141.9 KB | 2012-03-24 05:31 | 4 |
| scripts | |||
| fpfilter-help.txt | 1.7 KB | 2012-03-07 02:34 | 61 |
| mergeSegments-help.txt | 2.3 KB | 2012-03-07 02:33 | 9 |
| mergeSegments.pl | 13.9 KB | 2012-03-07 02:33 | 138 |
| fpfilter.pl | 15.9 KB | 2012-01-27 06:57 | 39 |
| VarScan.v2.2.8.jar | 77.1 KB | 2011-11-01 01:41 | 16 |
| VarScan.v2.2.8.source.jar | 137.5 KB | 2011-11-01 01:41 | 7 |
| VarScan.v2.2.7.jar | 69.8 KB | 2011-08-17 00:23 | 8 |
| VarScan.v2.2.7.source.jar | 125.6 KB | 2011-08-17 00:22 | 8 |
| VarScan.v2.2.6.jar | 61.5 KB | 2011-08-17 00:22 | 8 |
| VarScan.v2.2.5.jar | 60.4 KB | 2011-04-29 01:32 | 3 |
| VarScan.v2.2.3.jar | 53.9 KB | 2010-11-09 02:07 | 29 |
| VarScan.v2.2.2.jar | 82.4 KB | 2010-10-06 06:56 | 15 |
| VarScan.v2.2.source.tar | 250.0 KB | 2010-07-20 04:50 | 11 |
| VarScan.v2.2.source.jar | 82.6 KB | 2010-07-20 04:00 | 6 |
| VarScan-Documentation.v2.2.tar | 170.0 KB | 2010-04-28 03:13 | 30 |
| VarScan.v2.2.jar | 43.9 KB | 2010-04-28 03:12 | 8 |
| VarScan-Documentation.v2.1.tar | 140.0 KB | 2010-01-23 07:17 | 19 |
