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Project Description

バイオインフォマティクスのためのソフトウェアシステム、G-language Genome Analysis Environment(http://www.g-language.org/)の日本のユーザのための意見交換・ドキュメントの整備などを行う。

System Requirements

System requirement is not defined

Released at 2008-02-14 15:12
glang 1.8.1 (1 files Hide)

Release Notes

===== v.1.8.1 2008.02.14 =====
*mionor fix for dnawalk, genome_map3, circular_map for Genome Projector
*G::Tools::GMap::generateGMap() can now handle levels greater than 6
*HTML::Form now required for installation
*added G::Tools::EMBOSS, with seqret() , and G::Tools::Blast::blastall() by Kazuki Oshita
*added seqret.pl which is a simple script that use seqret() which functions identically as EMBOSS seqret command.
*added blastall.pl which is a simple script that use blastall() which functions identically as blastall commandline tool, but with DDBJ REST web service (so not formatdb required!).
*help command now stores documentation in virtual memory, and does not build everytime.
*help shows documentation when there is only one possible entry
*G::IO now keeps the pointer to the last instance created by new G(), which can be accessed by lastInstance G() or lastInstance G::IO(). SubOpt::opt_as_gb() now returns this lastInstance when there is no argument specified, so you can now do analysis in G-language Shell without making a variable for the G instance, as follows:

G > load ecoli
G > gcskew
[ecoli graph comes up]
G > load bsub
G > gcskew
[bsub graph comes up]

Changelog

===== v.1.8.1 2008.02.14 =====
*mionor fix for dnawalk, genome_map3, circular_map for Genome Projector
*G::Tools::GMap::generateGMap() can now handle levels greater than 6
*HTML::Form now required for installation
*added G::Tools::EMBOSS, with seqret() , and G::Tools::Blast::blastall() by Kazuki Oshita
*added seqret.pl which is a simple script that use seqret() which functions identically as EMBOSS seqret command.
*added blastall.pl which is a simple script that use blastall() which functions identically as blastall commandline tool, but with DDBJ REST web service (so not formatdb required!).
*help command now stores documentation in virtual memory, and does not build everytime.
*help shows documentation when there is only one possible entry
*G::IO now keeps the pointer to the last instance created by new G(), which can be accessed by lastInstance G() or lastInstance G::IO(). SubOpt::opt_as_gb() now returns this lastInstance when there is no argument specified, so you can now do analysis in G-language Shell without making a variable for the G instance, as follows:

G > load ecoli
G > gcskew
[ecoli graph comes up]
G > load bsub
G > gcskew
[bsub graph comes up]