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norep****@osdn*****
2016年 8月 29日 (月) 21:16:53 JST
#36532: installation on Mac el capitan failed
Open Date: 2016-08-10 13:45
Last Update: 2016-08-29 21:16
URL for this Ticket:
https://osdn.jp/ticket/browse.php?group_id=6231&tid=36532
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Last Changes/Comment on this Ticket:
2016-08-29 21:16 Updated by: guillaumegodin
Comment:
Dear,
Forget my stupid question on geometry optimization. I found it!
Btw, I have not or partial access to your list of the publications in your references (atom.h).
So it's hard for me to grab Atom properties for Br/I/P. I've just bougth the Pople book but for the rest, I will try to use the MOPAC data when available.
Can you share some publications related to whos Atoms Br/I/P or can you complete the atom defiinitions ?
you can use direct contact there: guill****@gmail*****
BR,
guillaume
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Ticket Status:
Reporter: guillaumegodin
Owner: (Aucun)
Type: Support Requests
Status: Atteints
Priority: 5 - Medium
MileStone: (Aucun)
Component: (Aucun)
Severity: 5 - Medium
Resolution: Aucun
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Ticket details:
I try to compile using g++4.9 + precompile boost 155 or boost 1.6 with mpi option. All is fine until the last ld linkage where the boost:achive failed in your MolDSException.
Here the log result same error on trunk or 0.3.1 version:
mpic++ -o molds -Wl,-rpath,/usr/local/opt/boost//lib/ obj/Enums.o obj/PrintController.o obj/MolDSException.o obj/MallocerFreer.o obj/MpiProcess.o obj/AsyncCommunicator.o obj/Blas.o obj/Lapack.o obj/Utilities.o obj/MathUtilities.o obj/EularAngle.o obj/Parameters.o obj/Atom.o obj/Hatom.o obj/Liatom.o obj/Catom.o obj/Natom.o obj/Oatom.o obj/Satom.o obj/EnvironmentalPointCharge.o obj/AtomFactory.o obj/Molecule.o obj/InputParser.o obj/GTOExpansionSTO.o obj/RealSphericalHarmonicsIndex.o obj/MOLogger.o obj/DensityLogger.o obj/HoleDensityLogger.o obj/ParticleDensityLogger.o obj/Cndo2.o obj/Indo.o obj/ZindoS.o obj/Mndo.o obj/Am1.o obj/Am1D.o obj/Pm3.o obj/Pm3D.o o
bj/Pm3Pddg.o obj/ElectronicStructureFactory.o obj/MD.o obj/MC.o obj/RPMD.o obj/NASCO.o obj/Optimizer.o obj/ConjugateGradient.o obj/SteepestDescent.o obj/BFGS.o obj/GEDIIS.o obj/OptimizerFactory.o obj/MolDS.o obj/Main.o -L/usr/local/opt/boost//lib/ -L/usr/local/opt/openblas//lib/ -lpthread -lgomp -lboost_serialization-mt -lboost_mpi-mt -lboost_thread-mt -lboost_system-mt -lopenblas
Undefined symbols for architecture x86_64:
"boost::archive::text_iarchive_impl<boost::archive::text_iarchive>::load(std::basic_string<char, std::char_traits<char>, std::allocator<char> >&)", referenced from:
void boost::serialization::load_construct_data<boost::archive::text_iarchive>(boost::archive::text_iarchive&, MolDS_base::MolDSException*, unsigned int) in MolDSException.o
"boost::archive::text_iarchive_impl<boost::archive::text_iarchive>::text_iarchive_impl(std::basic_istream<char, std::char_traits<char> >&, unsigned int)", referenced from:
MolDS_base::MolDSException::Deserialize(std::basic_istream<char, std::char_traits<char> >&) in MolDSException.o
"boost::archive::text_oarchive_impl<boost::archive::text_oarchive>::save(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)", referenced from:
boost::archive::detail::common_oarchive<boost::archive::text_oarchive>::vsave(boost::archive::class_name_type const&) in MolDSException.o
boost::archive::detail::pointer_oserializer<boost::archive::text_oarchive, MolDS_base::MolDSException>::save_object_ptr(boost::archive::detail::basic_oarchive&, void const*) const in MolDSException.o
"boost::archive::text_oarchive_impl<boost::archive::text_oarchive>::text_oarchive_impl(std::basic_ostream<char, std::char_traits<char> >&, unsigned int)", referenced from:
MolDS_base::MolDSException::Serialize(std::basic_ostream<char, std::char_traits<char> >&) in MolDSException.o
"boost::archive::basic_text_iprimitive<std::basic_istream<char, std::char_traits<char> > >::~basic_text_iprimitive()", referenced from:
MolDS_base::MolDSException::Deserialize(std::basic_istream<char, std::char_traits<char> >&) in MolDSException.o
boost::archive::text_iarchive_impl<boost::archive::text_iarchive>::~text_iarchive_impl() in MolDSException.o
boost::archive::text_iarchive_impl<boost::archive::text_iarchive>::~text_iarchive_impl() in MolDSException.o
boost::archive::text_iarchive::~text_iarchive() in MolDSException.o
boost::archive::text_iarchive::~text_iarchive() in MolDSException.o
boost::archive::text_iarchive_impl<boost::archive::text_iarchive>::~text_iarchive_impl() in MolDSException.o
"boost::archive::basic_text_oprimitive<std::basic_ostream<char, std::char_traits<char> > >::~basic_text_oprimitive()", referenced from:
MolDS_base::MolDSException::Serialize(std::basic_ostream<char, std::char_traits<char> >&) in MolDSException.o
boost::archive::text_oarchive_impl<boost::archive::text_oarchive>::~text_oarchive_impl() in MolDSException.o
boost::archive::text_oarchive_impl<boost::archive::text_oarchive>::~text_oarchive_impl() in MolDSException.o
boost::archive::text_oarchive::~text_oarchive() in MolDSException.o
boost::archive::text_oarchive::~text_oarchive() in MolDSException.o
ld: symbol(s) not found for architecture x86_64
collect2: error: ld returned 1 exit status
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Ticket information of MolDS project
MolDS Project is hosted on OSDN
Project URL: https://osdn.jp/projects/molds
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