Sample Data: (small dataset just for test) | 2015-05-20 07:35 |
Source (Snapshot): (2.7.5-20150612) | 2015-06-12 00:10 |
Windows Installer: (2.7.5 (first release build for OSS Edition)) | 2015-05-26 03:06 |
Component | Category | Plug-in name | Description | Binary Edition | OSS Edition |
Document | - | Release note, etc. | IN | ||
- | User's manual | IN | |||
File I/O | File I/O | File R/W basic function | IN | IN | |
mzXml I/O | R/W mzXML files | IN | IN | ||
mzml I/O | R/W mzML files | IN | IN | ||
AIA Input | Reading AIA (netCDF) files | IN | IN | ||
MSB I/O | R/W MSB files | IN | IN | ||
Text I/O | R/W plain text files | IN | IN | ||
Png Output | Writing PNG files | IN | IN | ||
Shimadzu Kratos AXIMA | Reading Shimadzu/Kratos AXIMA data files | IN | |||
Shimadzu Lcms Input | Reading Shimadzu LCMS data files | IN | IN(need vendor's dll to build | ||
Ab Qstar Input | Reading ABSciex Analyst/AnalystQS data files | IN | |||
Watewrs Input | Reading Waters MassLynx data files | IN | |||
Thermo I/O | Reading ThermoFisher Xcalibur data files | IN | Planned(See Milestone) | ||
Agilent Input | Reading Agilent MassHunter data files | IN | |||
Database | DB Manager | Internal database manager | IN | IN | |
SQLite | Database manager for SQLite | IN | IN | ||
PostgreSQL | Database manager for PostgreSQL | IN | IN | ||
Network | Http Proxy | Configurating HTTP Proxy | IN | IN | |
Viewer | MDI Child Frame | MDI window manager | IN | IN | |
Spectrum & Chromatogram Window Mode | Cordinator for Spectrum window and Chromatogram window | IN | IN | ||
Profile Canvas | Displaying single window | IN | IN | ||
Overlapping Canvas | Displaying overlapping windows | IN | IN | ||
Vertical Box Canvas | Displaying windows in stacked format | IN | IN | ||
Profile Drawer | Drawing waveform | IN | IN | ||
Scale Drawer | Drawing axes and scales | IN | IN | ||
Profile Range | Setting spectrum/chromatogram ranges | IN | IN | ||
Datamap Canvas | Configuring heat map area | IN | IN | ||
Datamap Drawer | Drawing heat maps | IN | IN | ||
Sample 3D View | Drawing 3-D graphs | IN | IN | ||
Data Map Range | Display range manager for data maps | IN | IN | ||
First View | Display manager for opened data | IN | IN | ||
Spectrum/Chromatogram | Select Range | Sending spectrum/chromatogram information and specified ranges to plug-ins | IN | IN | |
Magnifying View | Magnifying specified area in the spectrum | IN | IN | ||
Spectrum Changer | Changing displeyed spectrum | IN | IN | ||
Spectrum Precursor Product Changer | Displaying precursor/product ion spectrum | IN | IN | ||
Chromatogram Operation | Generating Mass Chromatograms/Base Peak Chromatograms | IN | IN | ||
Spectra Search | Searching spectra | IN | IN | ||
Raw Waveform | Displaying raw waveform data | IN | IN | ||
Peak Waveform | Displaying peaks on waveforms | IN | IN | ||
Data Map | Data Map Filter | Filtering data for data map | IN | IN | |
Pane | Sample Tree View | Sample Tree pane manager | IN | IN | |
Details View | Properties pane manager | IN | IN | ||
XYData View | Points/Peaks pane manager | IN | IN | ||
Spectra Grid View | Filtered Spectra pane manager | IN | IN | ||
Log View | Diagnostic Log pane manager | IN | IN | ||
Peaks | Peak Picking | Detecting peaks | IN | IN | |
GOZAN | Peak detection by MWD algorithm | IN | |||
Centroid Mode Labeling | Peak detection by Centroid mode | IN | IN | ||
Local Maximum Labeging | Peak detection by Local maximum mode | IN | IN | ||
GION | Peak detection by GION algorithm | IN | |||
Multi Algorithm Labeling | Peak detection by multiple algorithm | IN | IN | ||
API Peak Detection | Application Programing Interface for peak detection | IN | IN | ||
Spec Peak Filter Number Of Peaks | Selecting the specified number of highest peaks | IN | IN | ||
MRM 3D | 2-dimensional peak detection for MRM data | IN | IN | ||
Default Charge | Configurating charge setting function | IN | IN | ||
Simple Charge Detect | Detecting ion charges with isotopic peaks | IN | IN | ||
Intensity Rate Charge Detector | Detecting ion charges with MS/MS spectrum distibution | IN | IN | ||
Peak Search | Searching peaks | IN | IN | ||
Peaks I/O | R/W peak data | IN | IN | ||
Peak Edit | Editing peak properties | IN | IN | ||
Mspeaks | Peak detection with Matlab mspeaks function (32bit only) | IN | IN | ||
Mslowess | S/N filtering function with Matlab mslowness function | IN | IN | ||
Peak Label Drawer | Drawing peak labels | IN | IN | ||
Quantitation | Matrix View | Displaying a peak matrix | IN | IN | |
AB3D | Peak detection algorithm AB3D for quantification | IN | IN | ||
AB3D (2) | Program files for AB3D algorithm | IN | IN | ||
Labeling And Merge | Finding peak position by peak detection | IN | IN | ||
Merged Spectrum Peaks | Finding peak position with spectrum peaks | IN | IN | ||
MRM Peak Finder | Finding peak position for MRM data | IN | IN | ||
Peak Positions File Import | Importing peak position list | IN | IN | ||
Simple Peak Position Appender | Manually specifying peak positions | IN | IN | ||
Neighbor Peaks | Peak value calculation with neighbor peaks | IN | IN | ||
Commons Math | Statistic analysis with Commons Math library | IN | IN | ||
U Test | Mann-Whitney's u-test | IN | IN | ||
Matrix Group Plot | Plotting group distribution of intensities/areas | IN | IN | ||
Matrix Overlapping View | Displaying overlapping waveforms | IN | IN | ||
Basic Scaling | Simple normalization of peak intensities | IN | IN | ||
Matrix Peaks Merge | Merging neighbor peaks on peak matrix | IN | IN | ||
Identification | Identification | Identification function manager | IN | IN | |
Mascot Search | Searching sequence database by Mascot | IN | IN | ||
X Tandem | Searching sequence database by X!Tandem | IN | IN | ||
Mass Bank | Support function for MassBank | IN | IN | ||
MSn Search | Search engine with MSn spectra | IN | |||
Mascot PMF For LCMS | Mascot PMF search for LC-MS | IN | IN | ||
TPP | TPP tool wrapper | IN | IN | ||
Basic Data Manipulation | Baseline Subtraction | Subtracting baseline values from spectrum waveforms | IN | IN | |
ABC Baseline Detection | Baseline detection algorithm ABC | IN | IN | ||
BLT Baseline Detection | Baseline detection algorithm BLT | IN | |||
Linear Baseline Detection | Baseline detection algorithm Linear | IN | IN | ||
Background Subtraction | Subtracting backgroud signals from spectrum waveforms | IN | IN | ||
Filter | Filtering waveforms | IN | IN | ||
Linear Filter | Filtering waveforms with Linear-mode | IN | IN | ||
Window Filter | Filtering waveforms with window search | IN | IN | ||
Wavelet Analysis | Wavelet analysis | IN | |||
Mz Range Filter | Filtering waveforms with m/z ranges | IN | IN | ||
Msbackadj Baseline Detection | Detecting baseline with Matlab msbackadj function | IN | IN | ||
Operation Manager | History recorder of waveform manipulation | IN | IN | ||
Advanced Data Manipulation | Normalization | Data normalization function | IN | IN | |
Alignment | Retention time alignment function | IN | IN | ||
Merged Spectrum | Merging spectra function | IN | IN | ||
Composition | Merging, Subtracting or Dividing objective data | IN | IN | ||
Sample Merge | Merging sample data | IN | IN | ||
Msms Spectra Merge | Merging MS/MS spectra function | IN | IN | ||
Resampling | Resampling spectrum data points | IN | IN | ||
Advanced Structural Analysis | Glycan Analysis | N-glycan structure assignment with diagnostic ions | IN | IN | |
SIMSE | de novo sequencing tool | IN | |||
Compound Database for SIMSE | Basic compound database for SIMSE | IN | IN | ||
etc | Clipboard | Clipboard function | IN | IN | |
Settings | Environment settings | IN | IN | ||
Help | Showing helps | IN | IN | ||
Operation Log | Operation history function | IN | IN | ||
PluginManager | Plug-in manager | IN | IN | ||
Edit Sample User Properties | Editing user properties | IN | IN | ||
Batch Service | Batch operation manager | IN | IN | ||
Command Line Batch Service | Running specified batch jobs as commands in the background | IN | IN | ||
Script Plugin | Script Console operation manager | IN | IN | ||
Iron Python | Iron Python script interpreter | IN | IN | ||
Simca Display | SIMCA P+ wrapper | IN | IN | ||
Sample Tree Builder | Building sample tree | IN | IN | ||
Core libraries | CoreFunctions | Fundamental function for C | IN | IN | |
CoreToolkits | Fundamental classes for C++ | IN | IN | ||
DataObjects | Basic data object | IN | IN | ||
DataOperation | Basic data operation | IN | IN | ||
DbTools | Internal database manager | IN | IN | ||
EventManager | Event management | IN | IN | ||
GLTools | 3-D graphic management | IN | IN | ||
IdentificationTools | Identification/quantification manager | IN | IN | ||
ImageManager | Drawing/imaging manager | IN | IN | ||
JavaTools | Java-code management library | IN | IN | ||
NetworkTools | Network access function | IN | IN | ||
NumericalTools | Numerical calculation function | IN | IN | ||
PluginTools | Plug-in operation manager | IN | IN | ||
WindowManager | Graphic User Interface library | IN | IN | ||
XMLTools | XML file manager | IN | IN | ||
CLRManager | .NET Framework wrapper (Basic function) | IN | IN | ||
CLRPluginTools | .NET Framework wrapper (plug-in manager) | IN | IN | ||
ExecutableFile | mspp | IN | IN | ||
msppcmd | IN | IN | |||
Sample Data | data | - | Sample data | IN | IN(partially) |
Independent Package | Identification | PTM Librarian | PTM Librarian wrapper | other package | |
development tool kit | - | Library files for C/C++ | IN | ||
- | Include files for C/C++ | IN | |||
- | Setting files of VS wizard for C/C++ | IN | |||
- | Install files of VS wizard for C/C++ | IN | |||
- | VS wizard files for C# | IN | |||
- | Sample project files | IN |