Component | Category | Plug-in name | Description | Binary Edition | OSS Edition |
| Document | - | Release note, etc. | IN | |
| | - | User's manual | IN | |
| File I/O | File I/O | File R/W basic function | IN | IN |
| | mzXml I/O | R/W mzXML files | IN | IN |
| | mzml I/O | R/W mzML files | IN | IN |
| | AIA Input | Reading AIA (netCDF) files | IN | IN |
| | MSB I/O | R/W MSB files | IN | IN |
| | Text I/O | R/W plain text files | IN | IN |
| | Png Output | Writing PNG files | IN | IN |
| | Shimadzu Kratos AXIMA | Reading Shimadzu/Kratos AXIMA data files | IN | |
| | Shimadzu Lcms Input | Reading Shimadzu LCMS data files | IN | IN(need vendor's dll to build |
| | Ab Qstar Input | Reading ABSciex Analyst/AnalystQS data files | IN | |
| | Watewrs Input | Reading Waters MassLynx data files | IN | |
| | Thermo I/O | Reading ThermoFisher Xcalibur data files | IN | Planned(See Milestone) |
| | Agilent Input | Reading Agilent MassHunter data files | IN | |
| Database | DB Manager | Internal database manager | IN | IN |
| | SQLite | Database manager for SQLite | IN | IN |
| | PostgreSQL | Database manager for PostgreSQL | IN | IN |
| Network | Http Proxy | Configurating HTTP Proxy | IN | IN |
| Viewer | MDI Child Frame | MDI window manager | IN | IN |
| | Spectrum & Chromatogram Window Mode | Cordinator for Spectrum window and Chromatogram window | IN | IN |
| | Profile Canvas | Displaying single window | IN | IN |
| | Overlapping Canvas | Displaying overlapping windows | IN | IN |
| | Vertical Box Canvas | Displaying windows in stacked format | IN | IN |
| | Profile Drawer | Drawing waveform | IN | IN |
| | Scale Drawer | Drawing axes and scales | IN | IN |
| | Profile Range | Setting spectrum/chromatogram ranges | IN | IN |
| | Datamap Canvas | Configuring heat map area | IN | IN |
| | Datamap Drawer | Drawing heat maps | IN | IN |
| | Sample 3D View | Drawing 3-D graphs | IN | IN |
| | Data Map Range | Display range manager for data maps | IN | IN |
| | First View | Display manager for opened data | IN | IN |
| Spectrum/Chromatogram | Select Range | Sending spectrum/chromatogram information and specified ranges to plug-ins | IN | IN |
| | Magnifying View | Magnifying specified area in the spectrum | IN | IN |
| | Spectrum Changer | Changing displeyed spectrum | IN | IN |
| | Spectrum Precursor Product Changer | Displaying precursor/product ion spectrum | IN | IN |
| | Chromatogram Operation | Generating Mass Chromatograms/Base Peak Chromatograms | IN | IN |
| | Spectra Search | Searching spectra | IN | IN |
| | Raw Waveform | Displaying raw waveform data | IN | IN |
| | Peak Waveform | Displaying peaks on waveforms | IN | IN |
| Data Map | Data Map Filter | Filtering data for data map | IN | IN |
| Pane | Sample Tree View | Sample Tree pane manager | IN | IN |
| | Details View | Properties pane manager | IN | IN |
| | XYData View | Points/Peaks pane manager | IN | IN |
| | Spectra Grid View | Filtered Spectra pane manager | IN | IN |
| | Log View | Diagnostic Log pane manager | IN | IN |
| Peaks | Peak Picking | Detecting peaks | IN | IN |
| | GOZAN | Peak detection by MWD algorithm | IN | |
| | Centroid Mode Labeling | Peak detection by Centroid mode | IN | IN |
| | Local Maximum Labeging | Peak detection by Local maximum mode | IN | IN |
| | GION | Peak detection by GION algorithm | IN | |
| | Multi Algorithm Labeling | Peak detection by multiple algorithm | IN | IN |
| | API Peak Detection | Application Programing Interface for peak detection | IN | IN |
| | Spec Peak Filter Number Of Peaks | Selecting the specified number of highest peaks | IN | IN |
| | MRM 3D | 2-dimensional peak detection for MRM data | IN | IN |
| | Default Charge | Configurating charge setting function | IN | IN |
| | Simple Charge Detect | Detecting ion charges with isotopic peaks | IN | IN |
| | Intensity Rate Charge Detector | Detecting ion charges with MS/MS spectrum distibution | IN | IN |
| | Peak Search | Searching peaks | IN | IN |
| | Peaks I/O | R/W peak data | IN | IN |
| | Peak Edit | Editing peak properties | IN | IN |
| | Mspeaks | Peak detection with Matlab mspeaks function (32bit only) | IN | IN |
| | Mslowess | S/N filtering function with Matlab mslowness function | IN | IN |
| | Peak Label Drawer | Drawing peak labels | IN | IN |
| Quantitation | Matrix View | Displaying a peak matrix | IN | IN |
| | AB3D | Peak detection algorithm AB3D for quantification | IN | IN |
| | AB3D (2) | Program files for AB3D algorithm | IN | IN |
| | Labeling And Merge | Finding peak position by peak detection | IN | IN |
| | Merged Spectrum Peaks | Finding peak position with spectrum peaks | IN | IN |
| | MRM Peak Finder | Finding peak position for MRM data | IN | IN |
| | Peak Positions File Import | Importing peak position list | IN | IN |
| | Simple Peak Position Appender | Manually specifying peak positions | IN | IN |
| | Neighbor Peaks | Peak value calculation with neighbor peaks | IN | IN |
| | Commons Math | Statistic analysis with Commons Math library | IN | IN |
| | U Test | Mann-Whitney's u-test | IN | IN |
| | Matrix Group Plot | Plotting group distribution of intensities/areas | IN | IN |
| | Matrix Overlapping View | Displaying overlapping waveforms | IN | IN |
| | Basic Scaling | Simple normalization of peak intensities | IN | IN |
| | Matrix Peaks Merge | Merging neighbor peaks on peak matrix | IN | IN |
| Identification | Identification | Identification function manager | IN | IN |
| | Mascot Search | Searching sequence database by Mascot | IN | IN |
| | X Tandem | Searching sequence database by X!Tandem | IN | IN |
| | Mass Bank | Support function for MassBank | IN | IN |
| | MSn Search | Search engine with MSn spectra | IN | |
| | Mascot PMF For LCMS | Mascot PMF search for LC-MS | IN | IN |
| | TPP | TPP tool wrapper | IN | IN |
| Basic Data Manipulation | Baseline Subtraction | Subtracting baseline values from spectrum waveforms | IN | IN |
| | ABC Baseline Detection | Baseline detection algorithm ABC | IN | IN |
| | BLT Baseline Detection | Baseline detection algorithm BLT | IN | |
| | Linear Baseline Detection | Baseline detection algorithm Linear | IN | IN |
| | Background Subtraction | Subtracting backgroud signals from spectrum waveforms | IN | IN |
| | Filter | Filtering waveforms | IN | IN |
| | Linear Filter | Filtering waveforms with Linear-mode | IN | IN |
| | Window Filter | Filtering waveforms with window search | IN | IN |
| | Wavelet Analysis | Wavelet analysis | IN | |
| | Mz Range Filter | Filtering waveforms with m/z ranges | IN | IN |
| | Msbackadj Baseline Detection | Detecting baseline with Matlab msbackadj function | IN | IN |
| | Operation Manager | History recorder of waveform manipulation | IN | IN |
| Advanced Data Manipulation | Normalization | Data normalization function | IN | IN |
| | Alignment | Retention time alignment function | IN | IN |
| | Merged Spectrum | Merging spectra function | IN | IN |
| | Composition | Merging, Subtracting or Dividing objective data | IN | IN |
| | Sample Merge | Merging sample data | IN | IN |
| | Msms Spectra Merge | Merging MS/MS spectra function | IN | IN |
| | Resampling | Resampling spectrum data points | IN | IN |
| Advanced Structural Analysis | Glycan Analysis | N-glycan structure assignment with diagnostic ions | IN | IN |
| | SIMSE | de novo sequencing tool | IN | |
| | Compound Database for SIMSE | Basic compound database for SIMSE | IN | IN |
| etc | Clipboard | Clipboard function | IN | IN |
| | Settings | Environment settings | IN | IN |
| | Help | Showing helps | IN | IN |
| | Operation Log | Operation history function | IN | IN |
| | PluginManager | Plug-in manager | IN | IN |
| | Edit Sample User Properties | Editing user properties | IN | IN |
| | Batch Service | Batch operation manager | IN | IN |
| | Command Line Batch Service | Running specified batch jobs as commands in the background | IN | IN |
| | Script Plugin | Script Console operation manager | IN | IN |
| | Iron Python | Iron Python script interpreter | IN | IN |
| | Simca Display | SIMCA P+ wrapper | IN | IN |
| | Sample Tree Builder | Building sample tree | IN | IN |
Core libraries | | CoreFunctions | Fundamental function for C | IN | IN |
| | CoreToolkits | Fundamental classes for C++ | IN | IN |
| | DataObjects | Basic data object | IN | IN |
| | DataOperation | Basic data operation | IN | IN |
| | DbTools | Internal database manager | IN | IN |
| | EventManager | Event management | IN | IN |
| | GLTools | 3-D graphic management | IN | IN |
| | IdentificationTools | Identification/quantification manager | IN | IN |
| | ImageManager | Drawing/imaging manager | IN | IN |
| | JavaTools | Java-code management library | IN | IN |
| | NetworkTools | Network access function | IN | IN |
| | NumericalTools | Numerical calculation function | IN | IN |
| | PluginTools | Plug-in operation manager | IN | IN |
| | WindowManager | Graphic User Interface library | IN | IN |
| | XMLTools | XML file manager | IN | IN |
| | CLRManager | .NET Framework wrapper (Basic function) | IN | IN |
| | CLRPluginTools | .NET Framework wrapper (plug-in manager) | IN | IN |
ExecutableFile | | mspp | | IN | IN |
| | msppcmd | | IN | IN |
Sample Data | data | - | Sample data | IN | IN(partially) |
Independent Package | Identification | PTM Librarian | PTM Librarian wrapper | other package | |
| development tool kit | - | Library files for C/C++ | IN | |
| | - | Include files for C/C++ | IN | |
| | - | Setting files of VS wizard for C/C++ | IN | |
| | - | Install files of VS wizard for C/C++ | IN | |
| | - | VS wizard files for C# | IN | |
| | - | Sample project files | IN | |